View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_19 (Length: 275)
Name: NF3620_low_19
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_19 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6592238 - 6592512
Alignment:
| Q |
1 |
ttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat |
100 |
Q |
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| T |
6592238 |
ttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat |
6592337 |
T |
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| Q |
101 |
gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttt |
200 |
Q |
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| T |
6592338 |
gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggtctgggtttt |
6592437 |
T |
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| Q |
201 |
tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacat |
275 |
Q |
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| T |
6592438 |
tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacat |
6592512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 6601512 - 6601753
Alignment:
| Q |
20 |
gatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagcc |
119 |
Q |
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| T |
6601512 |
gatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagcc |
6601611 |
T |
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| Q |
120 |
agcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttttccagatttctaacacaaa |
219 |
Q |
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| || | ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| | |||||| |
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| T |
6601612 |
aacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccc------tttccagatttccagcacaaa |
6601705 |
T |
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| Q |
220 |
ctctttaacctgccatctggttagataaagagtccaccgatcaatatc |
267 |
Q |
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| T |
6601706 |
ctctttaacaggccttctggttagatgaagagtccatcgatcaatatc |
6601753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 3361962 - 3361842
Alignment:
| Q |
68 |
tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc |
167 |
Q |
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| T |
3361962 |
tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc |
3361863 |
T |
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| Q |
168 |
atgaaggtattttatagcgtt |
188 |
Q |
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| T |
3361862 |
accaagggatcttatagcgtt |
3361842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
| Q |
133 |
ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgt |
187 |
Q |
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| T |
3340690 |
ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt |
3340636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
| Q |
212 |
aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt |
270 |
Q |
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| T |
3349491 |
aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt |
3349433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
| Q |
12 |
ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg |
104 |
Q |
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|||||| |||||| |||||||||| |||||||| || || |||||| | | || |||||||| |||||||||||||| |||| ||| |||| |
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| T |
3218247 |
ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg |
3218339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 21237717 - 21237664
Alignment:
| Q |
130 |
taattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttata |
183 |
Q |
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| T |
21237717 |
taattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata |
21237664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 20923653 - 20923600
Alignment:
| Q |
136 |
taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg |
189 |
Q |
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| T |
20923653 |
taaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttg |
20923600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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