View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3620_low_26 (Length: 238)

Name: NF3620_low_26
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3620_low_26
NF3620_low_26
[»] chr8 (6 HSPs)
chr8 (1-156)||(17895046-17895205)
chr8 (20-190)||(17897537-17897711)
chr8 (94-155)||(35386823-35386889)
chr8 (2-93)||(10895869-10895961)
chr8 (1-84)||(287337-287420)
chr8 (94-155)||(13760442-13760508)
[»] chr3 (4 HSPs)
chr3 (1-156)||(6445190-6445349)
chr3 (55-190)||(37183962-37184102)
chr3 (1-61)||(37187475-37187535)
chr3 (94-122)||(36144298-36144326)
[»] chr6 (2 HSPs)
chr6 (1-156)||(4749295-4749456)
chr6 (1-78)||(4749465-4749541)
[»] scaffold0018 (1 HSPs)
scaffold0018 (49-84)||(67313-67348)
[»] scaffold0022 (2 HSPs)
scaffold0022 (2-93)||(101102-101194)
scaffold0022 (1-34)||(101123-101156)
[»] chr4 (3 HSPs)
chr4 (94-156)||(6582134-6582201)
chr4 (1-34)||(24139-24172)
chr4 (1-34)||(13914760-13914793)
[»] chr2 (3 HSPs)
chr2 (94-156)||(3566573-3566640)
chr2 (94-122)||(26249603-26249631)
chr2 (2-38)||(45049555-45049591)
[»] chr1 (2 HSPs)
chr1 (1-34)||(8314044-8314077)
chr1 (49-93)||(8314053-8314098)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 17895046 - 17895205
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataaaaaacattaaatgtaaattg 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17895046 aaaaaataaatgagtcatgatctcttttgattggctaagaaaaaaattatgagtcatgatccattctgattggttgataaaaaacattaaatgtaaattg 17895145  T
Q  101 tgtgtacataagaaataacat----tgatcttttcataataggttgccatgtgtactttt 156  Q
    |||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||    
T  17895146 tgtgtacataagaaataacattaaatgatcttttcataataggttgccacgtgtactttt 17895205  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 17897537 - 17897711
Alignment:
Q  20 atctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataaaaaacattaaatgtaaattgtgtgtacataagaaataac 119  Q
    ||||||||||||||||||||       ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17897537 atctcttttgattggctaagaaaaaaattatgagtcatgatccattctgattggttgataaaaaacattaaatgtaaattgtgtgtacataagaaataac 17897636  T
Q  120 at----tgatcttttcataataggttgccatgtgtacttttnnnnnnnnntagtgcaaatatatataataaagat 190  Q
    ||    ||||||||| ||||||||||| || |||||||||          |||||||||||||||||||||||||    
T  17897637 attaaatgatctttttataataggttgtcacgtgtactttaaaaaaaaaatagtgcaaatatatataataaagat 17897711  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 35386823 - 35386889
Alignment:
Q  94 taaattgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtgtacttt 155  Q
    ||||||||||||||||||||||||||||    ||||||||||| |||||| |||||| |||||||||    
T  35386823 taaattgtgtgtacataagaaataacattaaatgatcttttcactaatagattgccacgtgtacttt 35386889  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 10895961 - 10895869
Alignment:
Q  2 aaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataa-aaaacattaaatg 93  Q
    |||||||||||||||||||||  ||||||||| ||||          |||||||||||||||| || |||||||||||| |||||||||||||    
T  10895961 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaaacattaaatg 10895869  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 287420 - 287337
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataaaaaa 84  Q
    ||||||||||||||||||||||  ||||||||||||||          ||||||||||||| ||||| |||||||||| |||||    
T  287420 aaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaa 287337  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 13760442 - 13760508
Alignment:
Q  94 taaattgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtgtacttt 155  Q
    ||||||||||||||||||||||||||||    ||||| ||||| |||||||||||||  ||||||||    
T  13760442 taaattgtgtgtacataagaaataacattaaatgatcctttcactaataggttgccacatgtacttt 13760508  T

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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 6445190 - 6445349
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataaaaaacattaaatgtaaattg 100  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  6445190 aaaaaataaatgagtcatgatctcttttgattggctaagaaaaaaattatgagtcatgatccattctgattggttgataaaaaacattaaatgtaaattg 6445289  T
Q  101 tgtgtacataagaaataacat----tgatcttttcataataggttgccatgtgtactttt 156  Q
    |||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||    
T  6445290 tgtgtacataagaaataacattaaatgatcttttcataataggttgccacgtgtactttt 6445349  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 37184102 - 37183962
Alignment:
Q  55 catgatccattttaattggttgataaaaaacattaaatgtaaattgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtg 149  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||    
T  37184102 catgatccattctgattggttgataaaaaacattaaatgtaaattgtgtgtacataagaaataacattaaatgatcttttcactaataggttgccatgtg 37184003  T
Q  150 tacttttnnnnnnnnntagtgcaaatatatataataaagat 190  Q
    ||||||          |||||||||||||||||||||||||    
T  37184002 tactttaaaaaaaaaatagtgcaaatatatataataaagat 37183962  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37187535 - 37187475
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatc 61  Q
    |||||||||||||||| ||||||||||||||||||||||       |||||||||||||||    
T  37187535 aaaaaataaatgagtcgtgatctcttttgattggctaagaaaaaaattatgagtcatgatc 37187475  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 36144298 - 36144326
Alignment:
Q  94 taaattgtgtgtacataagaaataacatt 122  Q
    |||||||||||||||||||||||||||||    
T  36144298 taaattgtgtgtacataagaaataacatt 36144326  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 4749456 - 4749295
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgataaaaaacattaaa--tgtaaat 98  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| | |||||||||||||||| ||||||  |||||||    
T  4749456 aaaaaataaatgagtcatgatctcttttgattggctaagaaaaaa-ttatgagtcatgatccattctgattggttgataaaaaatattaaatgtgtaaat 4749358  T
Q  99 tgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtgtactttt 156  Q
    |||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||||||    
T  4749357 tgtgtgtacataagaaataacatttaatgatcttttcactaataggttgccacgtgtactttt 4749295  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4749541 - 4749465
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgat 78  Q
    ||||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||| | ||||||||||    
T  4749541 aaaaaataaatgagtcatgatctcttttgattgactaag-aaaaaattatgagtcatgatccattctgattggttgat 4749465  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 67313 - 67348
Alignment:
Q  49 atgagtcatgatccattttaattggttgataaaaaa 84  Q
    ||||||||||||||||||||||||||||||||||||    
T  67313 atgagtcatgatccattttaattggttgataaaaaa 67348  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 101194 - 101102
Alignment:
Q  2 aaaaataaatgagtcatgatctcttttgattggctaagnnnnnnnttatgagtcatgatccattttaattggttgat-aaaaaacattaaatg 93  Q
    |||||||||||||||||||||  ||||||||||||||          ||||||||||||| ||||| |||||||||| ||||| |||||||||    
T  101194 aaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatg 101102  T

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Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 101156 - 101123
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattgg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  101156 aaaaaataaatgagtcatgatctattttgattgg 101123  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 6582134 - 6582201
Alignment:
Q  94 taaattgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtgtactttt 156  Q
    |||||||||||||||||| |||||||||    |||||||||||  |||||||||||| ||||||||||    
T  6582134 taaattgtgtgtacataaaaaataacattaaatgatcttttcacgaataggttgccacgtgtactttt 6582201  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24139 - 24172
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattgg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  24139 aaaaaataaatgagtcatgatctattttgattgg 24172  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13914760 - 13914793
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattgg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  13914760 aaaaaataaatgagtcatgatctattttgattgg 13914793  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 3566640 - 3566573
Alignment:
Q  94 taaattgtgtgtacataagaaataacat----tgatcttttca-taataggttgccatgtgtactttt 156  Q
    ||||||||||||| ||||||||||||||    ||||||||||| |||||||| |||| ||||||||||    
T  3566640 taaattgtgtgtatataagaaataacattaaatgatcttttcactaataggtcgccacgtgtactttt 3566573  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 26249603 - 26249631
Alignment:
Q  94 taaattgtgtgtacataagaaataacatt 122  Q
    |||||||||||||||||||||||||||||    
T  26249603 taaattgtgtgtacataagaaataacatt 26249631  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 45049591 - 45049555
Alignment:
Q  2 aaaaataaatgagtcatgatctcttttgattggctaa 38  Q
    |||||||||||||||||||||  ||||||||||||||    
T  45049591 aaaaataaatgagtcatgatccattttgattggctaa 45049555  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8314044 - 8314077
Alignment:
Q  1 aaaaaataaatgagtcatgatctcttttgattgg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  8314044 aaaaaataaatgagtcatgatctattttgattgg 8314077  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 8314053 - 8314098
Alignment:
Q  49 atgagtcatgatccattttaattggttgat-aaaaaacattaaatg 93  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||    
T  8314053 atgagtcatgatctattttgattggttgataaaaaaacattaaatg 8314098  T

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