View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_27 (Length: 236)
Name: NF3620_low_27
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 44763119 - 44763338
Alignment:
| Q |
16 |
gaaaacaccctccctaatgacccgttccaatgcctcttaagtcactttttaattggataaaagtatccttcaattttatttttgttggataaaaaagtac |
115 |
Q |
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| T |
44763119 |
gaaaacaccctccctaaggacccgttccaatgcctcttaagtcactttttaattggataaaagtatccttcaattttatttttgttggataaaa-agtac |
44763217 |
T |
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| Q |
116 |
tgttgcttcatgttgtctcatttattgctacaagctaccaaaagcatagcacaaatatcactccccaacagccaaatcttaaagcacatgatcctgcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44763218 |
tgttgcttcatgttgtctcatttattgctacaagctaccaaaagcatagcacaaatatcactccccaacagccaaatcttaaagcacatgatcctgcatt |
44763317 |
T |
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| Q |
216 |
tactctcctcccccatttttc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
44763318 |
tactctcctcccccatttttc |
44763338 |
T |
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