View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3620_low_28 (Length: 227)
Name: NF3620_low_28
Description: NF3620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3620_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44763583 - 44763357
Alignment:
| Q |
1 |
ccaaaagtagaagcactagtaccacattgaaatgcatcctattcattttgtccaaccaaagtgtagtttcctttataacaagacaataacctaaaaagaa |
100 |
Q |
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| T |
44763583 |
ccaaaagtagaagcactagtaccacattgaaatgcatcctattcattttgtccaaccaaagtgtagtttcctttataacaagacaataacctaaaaagaa |
44763484 |
T |
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| Q |
101 |
tgatgaattaatgaagcaacgttaataaatgaagaagggaatttatgtagtgcaaattagggtggcttgcatttgaagtaaatatgaatgaatttatgga |
200 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44763483 |
tggtgaattaatgaagcaaggttaataaatgaagaagggaatttatgtagtgcaaattagggtggcttgcatttgaagtaaatatgaatgaatttatgga |
44763384 |
T |
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| Q |
201 |
aatggtaccaagtaagatagcattaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44763383 |
aatggtaccaagtaagatagcattaat |
44763357 |
T |
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