View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3621_high_1 (Length: 398)
Name: NF3621_high_1
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 2329405 - 2329773
Alignment:
| Q |
20 |
ctcctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacggtggagctgnnnnnnng |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2329405 |
ctcctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacggtggagctgaaaaaaag |
2329504 |
T |
|
| Q |
120 |
tgccgaagagcgagttacattaagatgggtaagctcacaattttgatgttctttatatatattttctttataacagccaagtgatcctgtaagttaagac |
219 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329505 |
tgctgaagagcgagttacattaagatgggtaagctcacaattttgatgttccttacatatattttctttataacagccaagtgatcctgtaagttaagac |
2329604 |
T |
|
| Q |
220 |
taatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatgagagaaaattttgattggaatagattttg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2329605 |
taatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatgagagaaaattgtgattggaatagattttg |
2329704 |
T |
|
| Q |
320 |
taagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttcat |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329705 |
taagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttcat |
2329773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 47775204 - 47775399
Alignment:
| Q |
22 |
cctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacg------------gtggagc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47775204 |
cctgagtatatgaaaacataccatctcactccaaaaagtgatgtttactcatttggaattttgcttttagaaattctgacgggccgtcgccctgtggagc |
47775303 |
T |
|
| Q |
110 |
tgnnnnnnngtgccgaagagcgagttacattaagatgggtaagctcaca----------attttgatgttctttatatatattttctttataacag |
195 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47775304 |
tgaaaaaaagtgctgaagagcgagttacattaagatgggtaagctcacaatttgttcttattttgatgttctttacatatattttctttataacag |
47775399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 288 - 388
Target Start/End: Original strand, 47775602 - 47775703
Alignment:
| Q |
288 |
atgagagaaaattttgattggaatagatttt-gtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttc |
386 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47775602 |
atgagagaaaattgtgattggaatagatttttgtaagttaggctcacaaaactgacatgtaaagggatgattatccaagacttataatcaagactacttc |
47775701 |
T |
|
| Q |
387 |
at |
388 |
Q |
| |
|
|| |
|
|
| T |
47775702 |
at |
47775703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 47775462 - 47775561
Alignment:
| Q |
192 |
acagccaagtgatcctgtaagttaagactaatttctgcccgtcacttcagaaaaatagataatttttgtcgttattctcgttgggaataatttgatatga |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47775462 |
acagccaagtgatcctgtaagttaagactaatttctgcc-gtcacttcacaaaaatagataatttttgtcgttattctcgttgggaataatttgatatga |
47775560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University