View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3621_high_11 (Length: 251)

Name: NF3621_high_11
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3621_high_11
NF3621_high_11
[»] chr8 (5 HSPs)
chr8 (1-233)||(45457198-45457412)
chr8 (187-233)||(14880396-14880442)
chr8 (146-233)||(25143966-25144049)
chr8 (187-225)||(23702350-23702388)
chr8 (152-233)||(37813298-37813375)
[»] chr7 (2 HSPs)
chr7 (187-233)||(17876230-17876276)
chr7 (172-233)||(45697537-45697599)
[»] chr1 (3 HSPs)
chr1 (187-233)||(12961052-12961098)
chr1 (172-226)||(6320608-6320663)
chr1 (188-233)||(8301552-8301597)
[»] chr4 (2 HSPs)
chr4 (187-226)||(2180836-2180875)
chr4 (181-233)||(21597609-21597661)
[»] chr3 (1 HSPs)
chr3 (153-233)||(44436605-44436681)
[»] chr5 (1 HSPs)
chr5 (156-233)||(9852821-9852893)
[»] chr2 (2 HSPs)
chr2 (154-233)||(4925470-4925546)
chr2 (153-233)||(25411573-25411648)
[»] chr6 (2 HSPs)
chr6 (189-233)||(1377270-1377314)
chr6 (189-233)||(1385018-1385062)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45457412 - 45457198
Alignment:
Q  1 catttcatttcattccaaataataatatttgattatagaaagtacgtggcggtaacgccagagtgacattacacccatattttgtcttataaaagaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45457412 catttcatttcattccaaataataatatttgattatagaaagtacgtggcggtaacgccagagtgacattacacccatattttgtcttataaaagaaaaa 45457313  T
Q  101 acattacattgttaactaaacaatccaggaacaaaatggtaaattatttaatggcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaa 200  Q
    |||||||||||||||||||                   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45457312 acattacattgttaactaa------------------tgtaaattatttaatggcttaatagcagttttaaccccctaagaagaagaaaaaattacaaaa 45457231  T
Q  201 ttgtcccctaaattttgcatctgtggccgtttt 233  Q
    | ||||||||||||||||||||||||| |||||    
T  45457230 tcgtcccctaaattttgcatctgtggcagtttt 45457198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 14880396 - 14880442
Alignment:
Q  187 aaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||| || ||||||||||||||||||||||||||||||| |||||    
T  14880396 aaaaaactataaaattgtcccctaaattttgcatctgtggcagtttt 14880442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 25143966 - 25144049
Alignment:
Q  146 atttaatggcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||| |||||||||||| | ||||| |||||||||||    |||||| |||||||||| || |||| ||||||||||||||| |||||    
T  25143966 attttatggcttaatagtagttttagccccctaagaa----aaaaaactacaaaattggccactaagttttgcatctgtggcagtttt 25144049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 23702388 - 23702350
Alignment:
Q  187 aaaaaattacaaaattgtcccctaaattttgcatctgtg 225  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  23702388 aaaaaattacaaaattgtcccctaagttttgcatttgtg 23702350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 37813375 - 37813298
Alignment:
Q  152 tggcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||||||||||| ||| | |||||||||||    |||||| |||||||  | ||||||| ||||||||||||||| |||||    
T  37813375 tggcttaatagcagtttcagccccctaagaa----aaaaaactacaaaaccgccccctaagttttgcatctgtggcagtttt 37813298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 17876230 - 17876276
Alignment:
Q  187 aaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||||||||||| || ||||||||||||||||||||||| |||||    
T  17876230 aaaaaattacaaaactgccccctaaattttgcatctgtggcggtttt 17876276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 45697537 - 45697599
Alignment:
Q  172 ccccctaagaagaagaaaaaat-tacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||||||||||||||||||  |||||||||| ||| ||||||||||| |||| || |||||    
T  45697537 ccccctaagaagaagaaaaaaactacaaaattgccccataaattttgcaactgtagcagtttt 45697599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 12961098 - 12961052
Alignment:
Q  187 aaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||| |||||||||||||||||||||||||| ||||||| |||||    
T  12961098 aaaaaactacaaaattgtcccctaaattttgcaactgtggcagtttt 12961052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 6320608 - 6320663
Alignment:
Q  172 ccccctaagaagaagaaaaaat-tacaaaattgtcccctaaattttgcatctgtgg 226  Q
    |||| ||||||||||||||||  |||||||  ||||||||||||||||||||||||    
T  6320608 ccccttaagaagaagaaaaaaaatacaaaaccgtcccctaaattttgcatctgtgg 6320663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 8301597 - 8301552
Alignment:
Q  188 aaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||| |||||||  ||||||||||||||||||||||||| |||||    
T  8301597 aaaaactacaaaaccgtcccctaaattttgcatctgtggcagtttt 8301552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 2180836 - 2180875
Alignment:
Q  187 aaaaaattacaaaattgtcccctaaattttgcatctgtgg 226  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  2180836 aaaaaactacaaaatcgtcccctaaattttgcatctgtgg 2180875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 21597661 - 21597609
Alignment:
Q  181 aagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||| |||||| |||||||  |||||||||||||||||| |||||| |||||    
T  21597661 aagaaaaaaaaactacaaaaccgtcccctaaattttgcatatgtggcagtttt 21597609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 44436681 - 44436605
Alignment:
Q  153 ggcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||||||||| ||||| |||||||||||    |||||| |||||||  | ||||||| ||||||||||||||| |||||    
T  44436681 ggcttaatagcagttttagccccctaagaa----aaaaaactacaaaaccgccccctaagttttgcatctgtggcagtttt 44436605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 9852821 - 9852893
Alignment:
Q  156 ttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||| || |||||||||||||||||     ||||| |||||||| | ||||||| ||||||||||||||| |||||    
T  9852821 ttaataacagttttaaccccctaagaa-----aaaaactacaaaatcgccccctaagttttgcatctgtggcagtttt 9852893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 4925470 - 4925546
Alignment:
Q  154 gcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||||||||| |||||| |||||   ||||| |||||| |||||||  ||||||||| |||||||| |||||| |||||    
T  4925470 gcttaatagcagttttaatcccct---aagaaaaaaaaactacaaaaccgtcccctaagttttgcatatgtggcagtttt 4925546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 25411573 - 25411648
Alignment:
Q  153 ggcttaatagcaattttaaccccctaagaagaagaaaaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    |||||||||||| ||||| |||||||||||     ||||| |||||||  | ||||||| ||||||||||||||| |||||    
T  25411573 ggcttaatagcagttttagccccctaagaa-----aaaaagtacaaaaccgccccctaagttttgcatctgtggcagtttt 25411648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1377270 - 1377314
Alignment:
Q  189 aaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||||||||||| | |||||||||||||||| |||||| |||||    
T  1377270 aaaattacaaaatcgccccctaaattttgcatttgtggctgtttt 1377314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1385018 - 1385062
Alignment:
Q  189 aaaattacaaaattgtcccctaaattttgcatctgtggccgtttt 233  Q
    ||||||||||||| | |||||||||||||||| |||||| |||||    
T  1385018 aaaattacaaaatcgccccctaaattttgcatttgtggctgtttt 1385062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University