View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_high_2 (Length: 385)
Name: NF3621_high_2
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 45457486 - 45457849
Alignment:
| Q |
1 |
tgattcacattaacgtgaagatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457486 |
tgattcacattaacgtgaagatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgttgatatt |
45457585 |
T |
|
| Q |
101 |
gatatcatcatattcatacgtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctatgactctatagagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45457586 |
gatatcatcatattcatacgtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctctgactctatagagaaa |
45457685 |
T |
|
| Q |
201 |
aagaaagaattaatacaagtgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatgctccgtccgtccatagaatttgaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457686 |
aagaaagaattaatacaagtgtgtgatcagatcatcttttcttctcttcttattaattacagtacttagtatgctccgtccgtccatagaatttgaacaa |
45457785 |
T |
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| Q |
301 |
gcacaagcattgtcttaatcgcttattcttccaaatacttgtttgtattcattcattcatccta |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45457786 |
gcacaagcattgtcttaatcgcttattcttccaaatacttgtttgtattcattcattcatccta |
45457849 |
T |
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