View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_high_3 (Length: 379)
Name: NF3621_high_3
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 103 - 361
Target Start/End: Original strand, 28953363 - 28953622
Alignment:
| Q |
103 |
tcgaagatgaagaaccctacggcgaagtcaaaa-aattatcggaagcaaagccttggaagattccaccggcatggaatatctcatcgaatgggaagatgg |
201 |
Q |
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| T |
28953363 |
tcgaagatgaagaaccctacggcgaagtcaaaaaaattatcggaagcaaagccttggaagattccaccggcatggaatatctcatcgaatgggaagatgg |
28953462 |
T |
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| Q |
202 |
ccatgaaccttcctgggtccccgccgacttcatagcaaaagacgtcgtcgctgaatacgaaactccctggtggaccgccgctagaaaatccgacgaaaat |
301 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953463 |
ccatcaaccttcctgggtccccgccgacttcatagcaaaagacgtcgtcgctgaatacgaaactccctggtggaccgccgctagaaaatccgacgaaaat |
28953562 |
T |
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| Q |
302 |
gccctcaaaacaatccttgaagccgacgattaccgtgacgtaaatgcagtagactctgat |
361 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28953563 |
gccctcaaaacaatccttgaagccgacgattaccgcgacgtaaatgcagtagactctgat |
28953622 |
T |
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