View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3621_high_5 (Length: 361)
Name: NF3621_high_5
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 32063233 - 32062896
Alignment:
| Q |
1 |
ctacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32063233 |
ctacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcattcccccttttatcaataaaattc |
32063134 |
T |
|
| Q |
101 |
caacatacccatgnnnnnnncaacttccaacagcattgctcccacttggtttgcatnnnnnnnnncat----ctgaaagctgaaacacttggtttgcata |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||| |
|
|
| T |
32063133 |
caacatacccatgtttttttcaacttccaacagcattgctcccacttggtttgcataaaaaaacgcctgaaactgaaagctgaaacacttggtttccata |
32063034 |
T |
|
| Q |
197 |
atccaacaacattgctctcacttggaacatgaaatcgaaagctgaaactgaattggaacaaaattgaaattgaaatcagtagaatcgatgttcatgtgaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063033 |
atccaacaacattgctctcacttggaagatgaaatggaaagctgaaactgaattggaacaaaattgaaattgaaatcagtagaatcgatgttcatgtgaa |
32062934 |
T |
|
| Q |
297 |
tcgatgaagaagaaattggaatggaagaagaaggtctt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062933 |
tcgatgaagaagaaattggaatggaagaagaaggtctt |
32062896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 1079028 - 1079371
Alignment:
| Q |
1 |
ctacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079028 |
ctacaaatcaaatcattctcataggtttcatgtttgttttcctgcttgttacggctcgattaacctgcgctaggcatccccccttttatcaataaaattc |
1079127 |
T |
|
| Q |
101 |
caacatacccatgnnnnnnncaacttccaacagcattgctcccactt----ggtttgcatnnnnnnnnncatctga------aagctgaaacacttggtt |
190 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||||| ||||||||| || |||| |||||||||||||||||| |
|
|
| T |
1079128 |
caacatacccatgtttttttcaacttccaacagtattgctctcacttaattggtttgcataaaaaaaaacacctgaaactgaaagctgaaacacttggtt |
1079227 |
T |
|
| Q |
191 |
tgcataatccaacaacattgctctcacttggaacatgaaatcgaaagctgaaactgaattggaacaaaattgaaattgaaatcagtagaatcgatgttca |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079228 |
tgcataatccaacaacattgctctcacttggaagatgaaatcgaaagctgaaactgaattgaaacaaaattgaaattgaaatcagtagaatcgatgttca |
1079327 |
T |
|
| Q |
291 |
tgtgaatcgatgaagaagaaattggaatggaagaagaaggtctt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1079328 |
tgtgaatcgatgaagaagaaattggaatggaagaagaaggtctt |
1079371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 43608396 - 43608055
Alignment:
| Q |
1 |
ctacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43608396 |
ctacaaatcaaatcattctcataggtttcatttttgtttccctgcttgttatggctggattaacctgcgctaggcatccccc-ttttatcaataaaattc |
43608298 |
T |
|
| Q |
101 |
caacatacccatgnnnnnnn-caacttccaacagcattgctcccacttggtttgcatnnnnnnnnncat--------ctgaaagctgaaacacttggttt |
191 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
43608297 |
caacatacccatgttttttttcaacttccaacaacattgctctcacttggtttgcataaaaaaaaaaacacctgaaactgaaagctgaaacacttggttt |
43608198 |
T |
|
| Q |
192 |
gcataatccaacaacattgctctcacttggaacatgaaatcgaaagctgaaactgaattggaacaaaattgaaattgaaatcagtagaatcgatgttcat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43608197 |
gcataatccaacaacattgctctcacttggaagatgaaatcgaaagttgaaactgaattgaaacaaaattgaaattgaaatcagtagaatcgatggtcat |
43608098 |
T |
|
| Q |
292 |
gtgaatcgatgaagaagaaattggaatggaagaagaaggtctt |
334 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43608097 |
gggaatcgatgaagaagaaattggaatggaagaagaaggtctt |
43608055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 33767498 - 33767416
Alignment:
| Q |
5 |
aaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatcccccctttt |
87 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| |||| ||||||| |||| |
|
|
| T |
33767498 |
aaatcaaatcattttcataggtttcatgtttgtgtccctgcttgttacggttggattaagctgcactagatatcccccttttt |
33767416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 24142074 - 24141743
Alignment:
| Q |
1 |
ctacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142074 |
ctacaaatcaaatcattctaataggtttcatgtttgtttccctgcttgttacggctggattaacttgcgctaggcatccccccttttatcaataaaattc |
24141975 |
T |
|
| Q |
101 |
caacatacccatgnnnnnnn-caacttccaacagcattgctcccacttggtttgcatnnnnnnnnnc-----atctgaaagctgaaacacttggtttgca |
194 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
24141974 |
caacatacccatgttttttttcaacttccaacaacattgctctcacttggtttgcataaaaaaaacacctgaaactgaaagctgaaacatttggtttgca |
24141875 |
T |
|
| Q |
195 |
taatccaacaacattgctctcacttggaacatgaaatcgaaagctgaaactgaattggaacaaaattgaaattgaaatcagtagaatcgatgttcatgtg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24141874 |
taatccaacaacattgctctcacttggaagatgaaatcgaaagctgaaactgaattgaaacaaaattgaaattgaaatcagtagaatcgatgttcatgtg |
24141775 |
T |
|
| Q |
295 |
aatcgatgaagaagaaattggaatggaagaag |
326 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
24141774 |
aatcgatgaagaaaaaattggaatggaagaag |
24141743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 47209693 - 47209721
Alignment:
| Q |
299 |
gatgaagaagaaattggaatggaagaaga |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47209693 |
gatgaagaagaaattggaatggaagaaga |
47209721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University