View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_high_6 (Length: 333)
Name: NF3621_high_6
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 52761866 - 52762168
Alignment:
| Q |
20 |
acctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctgaagaattgatttaaacaagatttatcaatgtagtatataaataatgctaa |
119 |
Q |
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| T |
52761866 |
acctgtgaagcgtaggtctgttggaatgggcttttatcttcattaagctgaagaattgatttaaacaagatttatcaatgtagtatataaataatgctaa |
52761965 |
T |
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| Q |
120 |
ttcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcatcaagaatgcaaagtgagaaaggacaaagattggtaattaaaggat |
219 |
Q |
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| T |
52761966 |
ttcagatagatgaagaacatctcaacattatggaaaatgtagtccgaagcgtcataaagaatacaaagtgag-aaggacaaagattggtaattaaaggat |
52762064 |
T |
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| Q |
220 |
tcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaacaagttgcacaggt |
319 |
Q |
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| T |
52762065 |
tcatacatctttgaattgaaaaaggccgagatcgccaaggtaagagatggatcgctgagctgattcaattggaatgatcaattgaacaagttgcataggt |
52762164 |
T |
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| Q |
320 |
tctg |
323 |
Q |
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|||| |
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| T |
52762165 |
tctg |
52762168 |
T |
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