View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3621_low_10 (Length: 260)

Name: NF3621_low_10
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3621_low_10
NF3621_low_10
[»] chr6 (9 HSPs)
chr6 (1-250)||(9411955-9412204)
chr6 (28-74)||(28935345-28935391)
chr6 (27-78)||(6410698-6410749)
chr6 (103-150)||(6596310-6596357)
chr6 (27-62)||(7132324-7132359)
chr6 (27-62)||(7135247-7135282)
chr6 (27-62)||(7138170-7138205)
chr6 (27-77)||(6423909-6423959)
chr6 (27-68)||(6395550-6395591)
[»] chr1 (4 HSPs)
chr1 (31-250)||(7555023-7555248)
chr1 (95-144)||(9581627-9581676)
chr1 (95-144)||(9587198-9587247)
chr1 (116-149)||(52094092-52094125)
[»] chr8 (4 HSPs)
chr8 (36-155)||(32151894-32152013)
chr8 (1-77)||(17642908-17642987)
chr8 (115-155)||(18314728-18314768)
chr8 (115-155)||(14004069-14004109)
[»] chr4 (7 HSPs)
chr4 (28-155)||(1755479-1755606)
chr4 (1-68)||(661871-661941)
chr4 (15-68)||(553772-553828)
chr4 (116-165)||(2373565-2373614)
chr4 (90-155)||(7225225-7225290)
chr4 (109-153)||(659977-660021)
chr4 (34-62)||(55907684-55907712)
[»] chr7 (4 HSPs)
chr7 (27-155)||(7977799-7977927)
chr7 (27-77)||(10615717-10615767)
chr7 (14-77)||(10169036-10169102)
chr7 (14-77)||(10176561-10176627)
[»] chr3 (1 HSPs)
chr3 (113-155)||(51763487-51763529)
[»] chr2 (1 HSPs)
chr2 (34-62)||(1036620-1036648)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9412204 - 9411955
Alignment:
Q  1 ctctccaaccatcgcaccattcccgctgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9412204 ctctccaaccatcgcaccattcccgctgggttgcgagctttctcccaaaatattacaactttaacctcattcacttcctcaagaatgggttctatcaata 9412105  T
Q  101 gcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412104 gcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacctgtgttatccccgtaaatttaaggatcatagctttcttaatagggt 9412005  T
Q  201 agagactctttcattgacacttttcaaactcaccaagattaatctctctg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412004 agagactctttcattgacacttttcaaactcaccaagattaatctctctg 9411955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 28935391 - 28935345
Alignment:
Q  28 gggttgcgagctttctcccaaaatattacaactttaacctcattcac 74  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  28935391 gggttgcgagccttctcccaaaacattacaactttaacctcactcac 28935345  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 6410749 - 6410698
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgc 78  Q
    |||||||| || |||||||||||| ||||||||||| ||||| |||||||||    
T  6410749 tgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgc 6410698  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 6596310 - 6596357
Alignment:
Q  103 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactc 150  Q
    ||||||||||||||||||||||| |||||||| |||||  ||||||||    
T  6596310 aatgacttgttactcattgctgattgtttcccattgctcaaagaactc 6596357  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 7132359 - 7132324
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaacttt 62  Q
    |||||||||||||||||||||||| |||||||||||    
T  7132359 tgggttgcgagctttctcccaaaacattacaacttt 7132324  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 7135282 - 7135247
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaacttt 62  Q
    |||||||||||||||||||||||| |||||||||||    
T  7135282 tgggttgcgagctttctcccaaaacattacaacttt 7135247  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 7138205 - 7138170
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaacttt 62  Q
    |||||||||||||||||||||||| |||||||||||    
T  7138205 tgggttgcgagctttctcccaaaacattacaacttt 7138170  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 6423959 - 6423909
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 77  Q
    |||||||||||||||||||||||| || |||||||| |||||  |||||||    
T  6423959 tgggttgcgagctttctcccaaaacataacaactttgacctctctcacttg 6423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 6395591 - 6395550
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaactttaacctc 68  Q
    |||||||| |||| |||||||||||||||||||||| |||||    
T  6395591 tgggttgcaagctctctcccaaaatattacaactttgacctc 6395550  T

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Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 7555248 - 7555023
Alignment:
Q  31 ttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtt 130  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  7555248 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 7555149  T
Q  131 tccctttgcttgaagaactcgacctgtgttatccccg---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacactttt 224  Q
    |||||||||| ||||||||| ||||| ||||||||||   ||||||||||||||||||   ||| |||||| || | ||||||||||||||| ||||||     
T  7555148 tccctttgctcgaagaactcaacctgggttatccccgtaataaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttc 7555049  T
Q  225 caaactcaccaagattaatctctctg 250  Q
    ||||||||||| ||||||||||||||    
T  7555048 caaactcaccaggattaatctctctg 7555023  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 9581676 - 9581627
Alignment:
Q  95 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 144  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||| ||||||    
T  9581676 tcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaa 9581627  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 9587247 - 9587198
Alignment:
Q  95 tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa 144  Q
    ||||||| ||||||||||| ||||||||  ||||||||||||| ||||||    
T  9587247 tcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaa 9587198  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 52094125 - 52094092
Alignment:
Q  116 tcattgctgaatgtttccctttgcttgaagaact 149  Q
    |||||||||||||||||||||| |||||||||||    
T  52094125 tcattgctgaatgtttccctttccttgaagaact 52094092  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 32152013 - 32151894
Alignment:
Q  36 agctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccct 135  Q
    ||||||||||||||| ||||||||||| |||||  ||||||| ||  | ||   |||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  136 ttgcttgaagaactcgacct 155  Q
    ||||| |||||||| |||||    
T  32151913 ttgctcgaagaacttgacct 32151894  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17642908 - 17642987
Alignment:
Q  1 ctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 77  Q
    ||||||||||||| |||||||||| |   |||||| | |||||||||||| |||||||||||||| |||||  |||||||    
T  17642908 ctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttg 17642987  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 18314728 - 18314768
Alignment:
Q  115 ctcattgctgaatgtttccctttgcttgaagaactcgacct 155  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  18314728 ctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 14004109 - 14004069
Alignment:
Q  115 ctcattgctgaatgtttccctttgcttgaagaactcgacct 155  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  14004109 ctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 1755606 - 1755479
Alignment:
Q  28 gggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaat 127  Q
    ||||||| ||||||||| ||||| ||||||||||| |||||  |||| || || |  || | |  | || ||| ||||||||| || ||||||||||| |    
T  1755606 gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgact 1755507  T
Q  128 gtttccctttgcttgaagaactcgacct 155  Q
    ||||||||||||||||||||||| ||||    
T  1755506 gtttccctttgcttgaagaactcaacct 1755479  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 661941 - 661871
Alignment:
Q  1 ctctccaaccatcgcaccattcccgct---gggttgcgagctttctcccaaaatattacaactttaacctc 68  Q
    |||||||||||   |||||||||||||   || |||||||||||||||||| |||||||||||||||||||    
T  661941 ctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctc 661871  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 553828 - 553772
Alignment:
Q  15 caccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctc 68  Q
    ||||||||||||   |||||||||||||||||||||||| ||||||||||| |||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 2373565 - 2373614
Alignment:
Q  116 tcattgctgaatgtttccctttgcttgaagaactcgacctgtgttatccc 165  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaacttgacttgagttatccc 2373614  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 7225225 - 7225290
Alignment:
Q  90 ttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcgacct 155  Q
    |||| ||| ||||| |||| |||| ||||| || || |||||||||||||| ||||||||||||||    
T  7225225 ttctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 660021 - 659977
Alignment:
Q  109 ttgttactcattgctgaatgtttccctttgcttgaagaactcgac 153  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  660021 ttgtttctcatagctgattgtttccctttgcttgacgaactcgac 659977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 55907684 - 55907712
Alignment:
Q  34 cgagctttctcccaaaatattacaacttt 62  Q
    |||||||||||||||||||||||||||||    
T  55907684 cgagctttctcccaaaatattacaacttt 55907712  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 7977927 - 7977799
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttgctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaa 126  Q
    |||||||| || |||||||||||||||| ||||||| |||||| |||  || || |  || |  ||||| |||| |||  || |||| ||||| || ||     
T  7977927 tgggttgccagttttctcccaaaatattgcaactttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagat 7977828  T
Q  127 tgtttccctttgcttgaagaactcgacct 155  Q
    |||||||||||||||||||||||||||||    
T  7977827 tgtttccctttgcttgaagaactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 10615767 - 10615717
Alignment:
Q  27 tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 77  Q
    |||||| ||||||||||||||||| ||||||||||| |||||  |||||||    
T  10615767 tgggttacgagctttctcccaaaagattacaactttgacctctctcacttg 10615717  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10169036 - 10169102
Alignment:
Q  14 gcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 77  Q
    |||||||||||||   ||||||||||| |||||| |||||||||| |||||| |||||  |||||||    
T  10169036 gcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg 10169102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10176561 - 10176627
Alignment:
Q  14 gcaccattcccgc---tgggttgcgagctttctcccaaaatattacaactttaacctcattcacttg 77  Q
    |||||||||||||   ||||||||||| |||||| |||||||||| |||||| |||||  |||||||    
T  10176561 gcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttg 10176627  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  113 tactcattgctgaatgtttccctttgcttgaagaactcgacct 155  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 1036620 - 1036648
Alignment:
Q  34 cgagctttctcccaaaatattacaacttt 62  Q
    |||||||||||||||||||||||||||||    
T  1036620 cgagctttctcccaaaatattacaacttt 1036648  T

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