View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_low_4 (Length: 367)
Name: NF3621_low_4
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_low_4 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24056679 - 24056785
Alignment:
| Q |
1 |
ctgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaacttggcataccccag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24056679 |
ctgatgctgttatatatctcctgctaaaaccactcacaacagaaaacacttcctaaagaaaagcgcagacagcagcaaatgtaaactcggcataccccag |
24056778 |
T |
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| Q |
101 |
cctcagc |
107 |
Q |
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||||||| |
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| T |
24056779 |
cctcagc |
24056785 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 21867441 - 21867507
Alignment:
| Q |
282 |
gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc |
348 |
Q |
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| T |
21867441 |
gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc |
21867507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 21923302 - 21923368
Alignment:
| Q |
282 |
gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc |
348 |
Q |
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| T |
21923302 |
gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc |
21923368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 3213996 - 3213944
Alignment:
| Q |
298 |
caaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatcct |
350 |
Q |
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| T |
3213996 |
caaattgtccaaatcgacgcatgtcaaataagccggtaacctttttgaatcct |
3213944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 2537 - 2472
Alignment:
| Q |
283 |
tcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc |
348 |
Q |
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|||||||||||||||||||| |||||| ||| || |||||||| | || ||| |||||||||||| |
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| T |
2537 |
tcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatc |
2472 |
T |
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