View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_low_7 (Length: 320)
Name: NF3621_low_7
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2288994 - 2288678
Alignment:
| Q |
1 |
acatcatcatataacttaaggcttgtgtgttgctgctcaatttaaacaagctatcagcttctttagacaactaaactacaccgatccaaaaattggtgtt |
100 |
Q |
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| T |
2288994 |
acatcatcatataacttaaggcttgtgtgttgctgctcaatttaaacaagctatcagcttctttagacaactaaactacaccgatccaaaaattggtgtt |
2288895 |
T |
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| Q |
101 |
cagttttttgagatctgtcggtattaaaattcaattacattcaaccaaatatttatgctcccaatatagttacagaacaagaggtaaaagatactaaaag |
200 |
Q |
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| T |
2288894 |
cagttttttgagatctgtcggtattaa--ttcaattacattcaaccaaatatttatgctcccaatatagttacagaacaagaggtaaaagatactaaaag |
2288797 |
T |
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| Q |
201 |
tgtggttgctgtgatggtaaaaggtggtgtcgaacctaatatcgctggttatcacgtggtcactaagtaactatacaaaggtgaaagagttgatgagatt |
300 |
Q |
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| T |
2288796 |
tgtggttgctgtgatggtaaaaggtggtgtcgaacctaatatcgctggttatcacgtggtcactaagtaactatacaaaggtgaaagagttgatgagatt |
2288697 |
T |
|
| Q |
301 |
acagaaacagttgaaagat |
319 |
Q |
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| T |
2288696 |
acagaaacagttgaaagat |
2288678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 670857 - 670801
Alignment:
| Q |
129 |
attcaattacattcaaccaaatatttatgctcccaatatagttacagaacaagaggt |
185 |
Q |
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| T |
670857 |
attcaattacatttaaccaaatatttatgctcctaatttagttaccgaacgagaggt |
670801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 677449 - 677541
Alignment:
| Q |
136 |
tacattcaaccaaatatttatgctcccaatatagttacagaacaagaggtaaaagatactaaaagtgtggttgctgtgatggtaaaaggtggt |
228 |
Q |
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| T |
677449 |
tacattccaccatgtatttctgctcttaatttagttactgaacaagaggtcaaagatgctaaaactgtagcagctgtgatgataaaagctggt |
677541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 47924793 - 47924720
Alignment:
| Q |
167 |
tagttacagaacaagaggtaaaagatactaaaagtgtggttgctgtgatggtaaaaggtggtgtcgaacctaat |
240 |
Q |
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| T |
47924793 |
tagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaatgcggtgtcaaacctaat |
47924720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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