View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3621_low_8 (Length: 318)
Name: NF3621_low_8
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 6291705 - 6292004
Alignment:
| Q |
1 |
ccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacacaaatcctcaaattcttagtacattttcaaaat |
100 |
Q |
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| T |
6291705 |
ccacaacctgaaaaagttcttgtactattaagcactctcaacctcacaaaaacaagaatctatgacacaaatcctcaaattctaagtacattttcaaaat |
6291804 |
T |
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| Q |
101 |
caaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaacaagcacttcaatgggtgaacagccgcatcataccgta |
200 |
Q |
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| T |
6291805 |
caaatattgaagtaattgtgacggttgaaaatgaaatattaaaccaattagatgatccacaacaagcacttcaatgggtgaacagccgcatcataccgta |
6291904 |
T |
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| Q |
201 |
cctacctaacacaaaaatcaccggaattcaagtaggtaacgaagttttcaccgacgatgatacaactcttcttcaacatcttgttccggcggtgattaat |
300 |
Q |
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| T |
6291905 |
cctacctaacacaaaaatcaccggaattcaagtaggtaacgaagttttcaccgacgatgatacaactcttcttcaacatcttgttccggcggtgattaat |
6292004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 32857000 - 32856874
Alignment:
| Q |
125 |
ttgaaaatgaaatattaaaccaattagatgatccacaacaagcacttcaatgggtgaacagccgcatcataccgtacctacctaacacaaaaatcaccgg |
224 |
Q |
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|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| || | | |||| ||| || || || ||||||| ||||| || |
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| T |
32857000 |
ttgaaaatcaaatactaaaccaattaaatgatccacaacaagcacttcaatgggtaaataccaatatcaaaccatatcttccagacacaaagatcactgg |
32856901 |
T |
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| Q |
225 |
aattcaagtaggtaacgaagttttcac |
251 |
Q |
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| T |
32856900 |
aattcaagtagggaatgaagttttcac |
32856874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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