View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3621_low_9 (Length: 307)
Name: NF3621_low_9
Description: NF3621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3621_low_9 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 43608666 - 43608380
Alignment:
| Q |
21 |
tgagcatcaaacacaacaaccttaaatattaacttgcctcctcaactacgaaccacagaaatatgaaaggtaggtgttatattggctttcatatttttta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43608666 |
tgagcatcaaacacaacaaccttaaaaattaacttgcctcctcaactacgaaccagagaaatatgaaaggtaggtgttatattggctttcatatttttta |
43608567 |
T |
|
| Q |
121 |
ctttcatatgcgatgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagattttttctagttactataata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43608566 |
ctttcatatgcgatgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttctagttactataata |
43608467 |
T |
|
| Q |
221 |
gttaattaatatgattcttttgatatgctttttatcctctaattgagtttcacagagtaaaaagtcttcactacaaatcaaatcatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43608466 |
gttaattaatatgattcttttgatatgctttctatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcatt |
43608380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 1078761 - 1079044
Alignment:
| Q |
25 |
catcaaacacaacaaccttaaatattaacttgcctcctcaactacgaaccacagaaatatgaaaggtaggtgttatattggctttcatattttttacttt |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1078761 |
catcaaacacaacaaccttaaaaattaacttgcctcctcaactacgaaccagagaaatatgaaaggtaggtgttatattggctttcatattttttacttt |
1078860 |
T |
|
| Q |
125 |
catatgcgatgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataaga-ttttttctagttactataatagtt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1078861 |
catatgcgatgaaatgtctccttgtgtaagattttgttgtatgcttttttccataatcaaaatatcattataagatttttttctagttactataatagtt |
1078960 |
T |
|
| Q |
224 |
aattaatatgattcttttgatatgctttttatcctctaattgagtttcacagagtaaaaagtcttcactacaaatcaaatcatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
1078961 |
aattaatatgattcttttgatatgctttctatcctctaattgagtttcacagggtaaaaagccttcactacaaatcaaatcatt |
1079044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 6973291 - 6973525
Alignment:
| Q |
60 |
cctcaactacgaaccacagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgcgatgaaatgtctccttgtataagatttt |
159 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6973291 |
cctcaactacgaaccagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtataagatttt |
6973390 |
T |
|
| Q |
160 |
gctgtatgnnnnnnnccataatcaaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttttatcctc |
259 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |
|
|
| T |
6973391 |
gctgtatgtttttttccataatcaaaatatcattataagattttttctagttactataataattaattaacatgattcttttgatatgctttctatccac |
6973490 |
T |
|
| Q |
260 |
taattgagtttcacagagtaaaaagtcttcactac |
294 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
6973491 |
taattgagtttcacaggataaaaagtcttcactac |
6973525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 307
Target Start/End: Complemental strand, 33767696 - 33767486
Alignment:
| Q |
98 |
tatattggctttcatattttttactttcatatgcgatgaaatgtctccttgtat-aagattttgctgtatgnnnnnnncca-taatcaaaatatcattat |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
33767696 |
tatattggctttcatattttg-actttcatatgcaatgaaatgtctccttgtatcaaggttttgctgtatgatttttttcaataatcaaaatatcattat |
33767598 |
T |
|
| Q |
196 |
aagattttttctagttactataatagttaattaatatgattcttttgatatgctttttatcctctaattgagtttcacagagtaaaaagtcttcactaca |
295 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||| || | |
|
|
| T |
33767597 |
aagattttctctagttagtataataattaattaatatgattcttttgatatgctttctatcctctaattgagttttaaagggtaaaaagtcttcattaaa |
33767498 |
T |
|
| Q |
296 |
aatcaaatcatt |
307 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33767497 |
aatcaaatcatt |
33767486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 6956523 - 6956560
Alignment:
| Q |
21 |
tgagcatcaaacacaacaaccttaaatattaacttgcc |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6956523 |
tgagcatcaaacacaacaaccttaaaaattaacttgcc |
6956560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 32063490 - 32063217
Alignment:
| Q |
21 |
tgagcatcaaacacaacaaccttaaatattaacttgcctcctcaactacgaaccacagaaatatgaaaggtaggtgttatattggctttcatatttttta |
120 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32063490 |
tgagcatcaaacacaacaagcttaaaaattaacttgcctcctcaactacgaaccagagaaatgtgaaaggtaggtgttatattggctttcatat------ |
32063397 |
T |
|
| Q |
121 |
ctttcatatgcgatgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagatttttt--ctagttactataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32063396 |
---------gcgatgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttttctagttactataa |
32063306 |
T |
|
| Q |
219 |
tagttaattaatatgattcttttgatatgctttttatcctctaattgagtttcacagagtaaaaagtcttcactacaaatcaaatcatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32063305 |
tagttaattaatatgattcttttgatatgttttctatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcatt |
32063217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 182 - 307
Target Start/End: Complemental strand, 24142183 - 24142058
Alignment:
| Q |
182 |
caaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttttatcctctaattgagtttcacagagtaaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24142183 |
caaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttctatcctctaattgagtttcacagggtaaa |
24142084 |
T |
|
| Q |
282 |
aagtcttcactacaaatcaaatcatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24142083 |
aagtcttcactacaaatcaaatcatt |
24142058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University