View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_high_1 (Length: 700)

Name: NF3622_high_1
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_high_1
NF3622_high_1
[»] chr5 (1 HSPs)
chr5 (17-689)||(1184960-1185635)


Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 17 - 689
Target Start/End: Original strand, 1184960 - 1185635
Alignment:
Q  17 aagagatacttacagttagtgtgtagcagatgggtaactgctcatggatcattctcgcaacttgagggttttttcttgcgcctgcggcttgggaagtggg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1184960 aagagatacttacagttagtgtgtagcagatgggtaactgctcatggatcattctcgcaacttgagggttttttcttgcgcctgcggcttgggaagtggg 1185059  T
Q  117 aagaagggcttggaggaactggttaccatgtggcttgtataactataagtggtataattaaaatcacaccttgcccttggaatgtagaatcatacctggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1185060 aagaagggcttggaggaactggttaccatgtggcttgtataacgataagtggtataattaaaatcacaccttgcccttggaatgtagaatcatacctggt 1185159  T
Q  217 tcannnnnnnnn--ggacaacttgttcataatgctttcttgtttttaaactttt-cttattctggtgtatgatagaatccgagaaacatagtttagagaa 313  Q
    |||           ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1185160 tcatttttttttttggataacttgttcataatgcttttttgtttttaaactttttcttattctggtgtatgatagaatccgagaaacatagtttagagaa 1185259  T
Q  314 gcataccagaaaatctctctcagtgaaagtagggggaatcaagtgtatggtagaaagtcattatatatcccatcaagattttcctgaggtaataatcaat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1185260 gcataccagaaaatctctctcagtgaaagtagggggaatcaagtgtatggtagaaagtcattatatatccaatcaagattttcttgaggtaataatcaat 1185359  T
Q  414 catcaatgattattttttggatttaatttgtatatattgtcactgtaaaacttttttaactacacttatcgcgataataatcaactttacactgcaagtg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1185360 catcaatgattattttttggatttaatttgtatatattgtcactgtaaaacttttttaactgcacttatcgtgataataatcaactttacactgcaagtg 1185459  T
Q  514 cataacaattaatcttttatctgtaagattttctgctagttctcattttatgcgtgcctattgttattgaagctattagtttcaatgtcattttgataac 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1185460 cataacaattaatcttttatctgtaagattttctgctagttctcattttatgcgtgcctattgttattgaagctattagtttcaatgtcattttgataac 1185559  T
Q  614 tccagaaactcatgtgaaattcaactttaataaattttatggaatgggaatctttcatgtgtgtatgatgatgatg 689  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1185560 tccagaaactcatgtgaaattcagctctaataaattttatggaatgggaaactttcatgtgtgtatgatgatgatg 1185635  T

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