View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_high_11 (Length: 409)
Name: NF3622_high_11
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 39014099 - 39013712
Alignment:
| Q |
8 |
gagcacagacaagaatggtataaggaaatgcttgactttgcttctgacaacgatgagagacgtaaactccttgaaaggtatttatatgatgtttaaatat |
107 |
Q |
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| T |
39014099 |
gagctcagacaagaatggtataaggaaatgcttgactttgcttctgacaacgatgagagacgtaaactccttgaaaggtatttatatgatgtttaaatat |
39014000 |
T |
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| Q |
108 |
atttcacattttccttgtatactctaacaattgttgagtccaagacaactcaattgtataaatagtaaatcaagaattgaataagagacattatgacatt |
207 |
Q |
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| T |
39013999 |
atttcacattttccttgtatactctaacaattgtttagtccaagacaactcaattgtataaatagtaaatcaagaattgaataagagacattatgacatt |
39013900 |
T |
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| Q |
208 |
ggtgcatagtgaattgagcataatgtaatgaagttttgtttgcaatttcactgaattaat--tgagcataaactaaactatgtttgcagaaaaacagttt |
305 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39013899 |
ggtgcatagtgaattgagcataatgcaatgaagttttgtttgcaatttcactgaattaattgtgagcataaactaaactatgtttgcagaaaaacagttt |
39013800 |
T |
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| Q |
306 |
caactgtcctttctagtgactttcgagaaaagatggataaattgatggagtctcatgtgggaacacaaacacacttggtcaataatca |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39013799 |
caactgtcctttctagtgactttcgagaaaagatggataaattgatggagtctcatgtgggaacacaaacacacttggtcaataatca |
39013712 |
T |
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