View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_high_21 (Length: 321)

Name: NF3622_high_21
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_high_21
NF3622_high_21
[»] chr1 (1 HSPs)
chr1 (14-309)||(42158693-42158988)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 42158988 - 42158693
Alignment:
Q  14 atcaacaacaagcaactgagaacgacgaagaagttgaagttgaattgaatctgcgatacatcagcctcagagacgctgaattggtttcaaacttcatcgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42158988 atcaacaacaagcaactgagaacgacgaagaagttgaagttgaattgaatctgcgatacatcagcctcagagacgctgatttggtttcaaacttcatcgc 42158889  T
Q  114 ttctcatggctccgaagtaactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggcggaacttttacttcttctcaaaaac 213  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42158888 ttctcatggctccgaaataactctgcctactttcaagtctcctgaagtgaagggcttggcatacacaaccttggcggaacttttacttcttctcaagaac 42158789  T
Q  214 cattcaatcttagatctccttgacaatcaacgctctctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtggacctttgctt 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42158788 cattcaatcttagatctccttgacaatcaacgctttctactcgttaagttacttgaagatcttcaccatacatttcgttttcgtggaccttggctt 42158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University