View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_high_24 (Length: 304)

Name: NF3622_high_24
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_high_24
NF3622_high_24
[»] scaffold0182 (1 HSPs)
scaffold0182 (21-290)||(29822-30091)
[»] chr2 (3 HSPs)
chr2 (21-290)||(26397537-26397806)
chr2 (21-290)||(26459901-26460173)
chr2 (21-277)||(25830094-25830350)
[»] scaffold0006 (1 HSPs)
scaffold0006 (21-290)||(276932-277201)
[»] chr4 (2 HSPs)
chr4 (21-265)||(20646280-20646524)
chr4 (21-290)||(56108239-56108508)
[»] chr6 (1 HSPs)
chr6 (21-290)||(26014006-26014275)
[»] chr3 (1 HSPs)
chr3 (21-296)||(33002220-33002494)
[»] chr7 (1 HSPs)
chr7 (21-290)||(6965511-6965780)
[»] chr1 (3 HSPs)
chr1 (108-290)||(845527-845709)
chr1 (27-267)||(30400105-30400346)
chr1 (27-267)||(30406662-30406903)


Alignment Details
Target: scaffold0182 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 29822 - 30091
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29822 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacatgaccatcatcatccaaatcaaatgcataaaagaatc 29921  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29922 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttatctaaataatttctaac 30021  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30022 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 30091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 26397537 - 26397806
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26397537 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 26397636  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26397637 ttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 26397736  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26397737 atctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgctt 26397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 26460173 - 26459901
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatc---caaatcaaatgcataaaaga 117  Q
    |||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||   |||||| |  ||||||||||    
T  26460173 acatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaaga 26460074  T
Q  118 atcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttct 217  Q
    |||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||  |||| |    
T  26460073 atcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagattttt 26459974  T
Q  218 aacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    || |||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| | |||||||    
T  26459973 aatatctttctccaagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaaatttgctt 26459901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 25830094 - 25830350
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    |||||||||||  ||||||||||||||||||| ||| |||||| |||||| |||||| |||||||| | |||||||||||||||| ||||||||| ||||    
T  25830094 acatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaaaaaatc 25830193  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    | | |||||||||||||||| |||||||| |||||| |||||   |||| ||||| || |||||   |||||||||    |||||||||| ||||||||     
T  25830194 taggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatttctaat 25830293  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggc 277  Q
     |||||||||||||| | ||  || ||||| ||||| ||||||||||||||||||||    
T  25830294 gtctttctccaagcagctaatgttttcataccctccatgttgtttggccattgtggc 25830350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 276932 - 277201
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  276932 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 277031  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  277032 ttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 277131  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  277132 atctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgctt 277201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 20646280 - 20646524
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    |||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||||||||||||| |  |||||||||||||    
T  20646280 acatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatc 20646379  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    ||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||| ||| |||||||| | ||||||||||||  ||||||||     
T  20646380 ttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaat 20646479  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgttt 265  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  20646480 atctttctccgagcaaccaactttctcatatcctccgtgttgttt 20646524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 56108508 - 56108239
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| |  ||||| |||||||||| ||||| ||||||||||||||    
T  56108508 acatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatc 56108409  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
     || | |||||||||||||  |||||||| | || | |||||||||||||||||| |||||||||  |||||| ||  | ||||||||||  ||||| ||    
T  56108408 ctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttac 56108309  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    ||||||||||||||||||||  || ||||||||||| | || |||||||||||||||||| |||||||||    
T  56108308 atctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaattttgctt 56108239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 26014275 - 26014006
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| |  ||||| |||||||||| ||||| ||||||||||||||    
T  26014275 acatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatc 26014176  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
     || | |||||||||||||  |||||||| | |||| |||||||||||||||||| |||||||||  |||||| ||  | ||||||||||  ||||| ||    
T  26014175 ctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttac 26014076  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    ||||||||||||||||||||  || ||||||||||| | || |||||||||||||||||| | |||||||    
T  26014075 atctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaaatttgctt 26014006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 33002494 - 33002220
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc 120  Q
    |||||||||||  ||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||||| ||||    
T  33002494 acatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaaa-aatc 33002396  T
Q  121 ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac 220  Q
    | | |||||||||||||||| |||||||| |||||| |||||   |||||||||| || |||||   |||||||||    |||||||||| ||||||||     
T  33002395 taggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatttctaat 33002296  T
Q  221 atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttcttttc 296  Q
     |||||||||||||| ||||  || ||||| ||||| |||||||||||||||||||| || |||||| || |||||    
T  33002295 gtctttctccaagcatccaatgttttcataccctccatgttgtttggccattgtggcgaaaattttggttgttttc 33002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 6965780 - 6965511
Alignment:
Q  21 acatctccaaacactttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaat 119  Q
    |||||||||||| ||| ||| |  |||||||| ||| ||| | ||||||||||||||||| |  ||||| |||||||||| ||||| |||||||||||||    
T  6965780 acatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaat 6965681  T
Q  120 cttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaa 219  Q
    | || |||||||||||||||  |||||||| | |||| ||||||||||||||||||||||||||||  |||||| ||  | ||||||||||  ||||| |    
T  6965680 cctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttctta 6965581  T
Q  220 catctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    ||||||||||||||||||||| | | ||||||||||| | || |||||||||||||||||| | |||||||    
T  6965580 catctttctccaagcaaccaa-tgtttcatatcctccatattctttggccattgtggcaaaaaatttgctt 6965511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 845527 - 845709
Alignment:
Q  108 gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatcta 207  Q
    |||||||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  845527 gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta 845626  T
Q  208 aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt 290  Q
    ||  |||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||||    
T  845627 aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgctt 845709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 30400346 - 30400105
Alignment:
Q  27 ccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaat 126  Q
    |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| |||||||   || |||| |||||   ||    
T  30400346 ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat 30400247  T
Q  127 tttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatctaaataatttctaacatct 224  Q
    ||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || |||  |||  |||| ||||    |||||||||| ||||||||  |||    
T  30400246 tttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct 30400148  T
Q  225 ttctccaagcaaccaactttctcatatcctccgtgttgtttgg 267  Q
    ||||||||||||||||  || ||||||| ||| ||||||||||    
T  30400147 ttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30400105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 30406903 - 30406662
Alignment:
Q  27 ccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaat 126  Q
    |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| |||||||   || |||| |||||   ||    
T  30406903 ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat 30406804  T
Q  127 tttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatctaaataatttctaacatct 224  Q
    ||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || |||  |||  |||| ||||    |||||||||| ||||||||  |||    
T  30406803 tttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct 30406705  T
Q  225 ttctccaagcaaccaactttctcatatcctccgtgttgtttgg 267  Q
    ||||||||||||||||  || ||||||| ||| ||||||||||    
T  30406704 ttctccaagcaaccaatgttttcatatcatccatgttgtttgg 30406662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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