View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_high_25 (Length: 296)
Name: NF3622_high_25
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 20232354 - 20232177
Alignment:
| Q |
1 |
cgtaaaatgcaactttgcatttgcttaggaactaaggattagttctttctttcattaaacaaaggaagaacaaggctagtggaagtggtttgaaatgatg |
100 |
Q |
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| T |
20232354 |
cgtaaaatgcaactttgcatttgcttaggaactaaggattagttctttctttcattaaacaaaggaagaacagggctagtggaagtggtttgaaatgatg |
20232255 |
T |
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| Q |
101 |
aattttcactcttattcatcttttcaccaaactccaaaaataactatccaccaatccactcctctatattccattgaa |
178 |
Q |
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| T |
20232254 |
aattttcactcttattcatcttttcaccaaactccaaaaataactttccaccaatccactcctctatattccattgaa |
20232177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 20232102 - 20232009
Alignment:
| Q |
185 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttc |
278 |
Q |
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| T |
20232102 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttc |
20232009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44314261 - 44314084
Alignment:
| Q |
1 |
cgtaaaatgcaactttgcatttgcttaggaactaaggattagttctttctttcattaaacaaaggaagaacaaggctagtggaagtggtttgaaatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44314261 |
cgtaaaatgcaactttgcatttgcttaggaactaaggattagttctttctttcattaaacaaaggaagaacagggctagtggaagtggtttgaaatgatg |
44314162 |
T |
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| Q |
101 |
aattttcactcttattcatcttttcaccaaactccaaaaataactatccaccaatccactcctctatattccattgaa |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44314161 |
aattttcactcttattcatcttttcaccaaactccaaaaataactttccaccaatccactcctctatattccattgaa |
44314084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 44314009 - 44313916
Alignment:
| Q |
185 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314009 |
atgaacatcgaaaatagaaaatgagagaatattaaaaataccgatctcttggtgcagatttcttgagctctttcaataacaatagtagcagttc |
44313916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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