View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_high_26 (Length: 293)
Name: NF3622_high_26
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 37187836 - 37188104
Alignment:
| Q |
21 |
tttaaatattttagctctatccagtagctactnnnnnnnn-gataagagttgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187836 |
tttaaatattttagctctatccagtagctactaaaaaaaaagataagagttgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattg |
37187935 |
T |
|
| Q |
120 |
ggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctataccaaatccaaccatgcctttactttacccactcctca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37187936 |
ggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgggcatccacctataccaaatccaaccatgcctttactttacccactcctca |
37188035 |
T |
|
| Q |
220 |
ttcctcaccaactttcaataccccatactatagcttcaattgaaccttcttgtaactttcctttctttt |
288 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37188036 |
ttcctcaccaactttcaacaccccatactatatcttcaattgaaccttcttgtaactttcctttctttt |
37188104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 53491914 - 53492053
Alignment:
| Q |
70 |
tgatcaaaggcggtgaatgttttgcacattaattgtatggctggctattgggtatacagcatttcatgcacaaccgcgtgtgatgatatcatttgggtgg |
169 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||| || ||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
53491914 |
tgatcaaaggcggtgaacgttttacacattaaatgtgtgactggctaatgggtatacagcatttcatgcacaaacgtgtgtgatgatatcatttgggtgg |
53492013 |
T |
|
| Q |
170 |
gcatccacctataccaaatccaaccatgcctttactttacccactc |
215 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
53492014 |
gcat-----tataccaaa-ccaaccatgtctttactttacccactc |
53492053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University