View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_high_30 (Length: 268)

Name: NF3622_high_30
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_high_30
NF3622_high_30
[»] chr3 (10 HSPs)
chr3 (1-40)||(203086-203125)
chr3 (1-36)||(14186648-14186683)
chr3 (2-37)||(37788507-37788542)
chr3 (2-36)||(16354934-16354968)
chr3 (2-36)||(26988996-26989030)
chr3 (2-36)||(27093403-27093437)
chr3 (3-36)||(5499450-5499483)
chr3 (1-37)||(4222140-4222176)
chr3 (8-36)||(8796140-8796168)
chr3 (1-37)||(11092210-11092246)
[»] chr8 (10 HSPs)
chr8 (1-36)||(20994499-20994534)
chr8 (1-38)||(18540296-18540333)
chr8 (1-36)||(16852340-16852375)
chr8 (1-36)||(19703528-19703563)
chr8 (1-36)||(23874423-23874458)
chr8 (2-36)||(5264544-5264578)
chr8 (1-34)||(2203494-2203527)
chr8 (1-34)||(3624582-3624615)
chr8 (3-36)||(3826820-3826853)
chr8 (1-38)||(32157189-32157226)
[»] chr2 (11 HSPs)
chr2 (2-36)||(40416432-40416466)
chr2 (4-36)||(34041632-34041664)
chr2 (1-37)||(42327436-42327472)
chr2 (8-39)||(9318122-9318153)
chr2 (1-36)||(42602554-42602589)
chr2 (2-37)||(42922413-42922448)
chr2 (118-192)||(31703560-31703634)
chr2 (3-32)||(3001383-3001412)
chr2 (3-36)||(5147722-5147755)
chr2 (8-36)||(4060262-4060290)
chr2 (8-36)||(29503271-29503299)
[»] chr5 (7 HSPs)
chr5 (3-36)||(3252332-3252365)
chr5 (1-36)||(21549178-21549213)
chr5 (2-36)||(7918511-7918545)
chr5 (2-36)||(19043458-19043492)
chr5 (2-36)||(25627057-25627091)
chr5 (1-37)||(21589287-21589323)
chr5 (8-36)||(26078099-26078127)
[»] chr7 (13 HSPs)
chr7 (1-37)||(39499760-39499796)
chr7 (1-36)||(23301643-23301678)
chr7 (1-36)||(23552118-23552153)
chr7 (1-36)||(25021376-25021411)
chr7 (1-36)||(26459451-26459486)
chr7 (1-36)||(35119383-35119418)
chr7 (1-36)||(39631844-39631879)
chr7 (1-36)||(42836042-42836077)
chr7 (1-35)||(22927477-22927511)
chr7 (1-31)||(41519305-41519335)
chr7 (2-36)||(45559200-45559234)
chr7 (4-33)||(4566472-4566501)
chr7 (3-36)||(24513797-24513830)
[»] chr1 (7 HSPs)
chr1 (1-37)||(31794305-31794341)
chr1 (1-36)||(8904414-8904449)
chr1 (1-36)||(9165236-9165271)
chr1 (2-36)||(36371470-36371504)
chr1 (3-36)||(38978985-38979018)
chr1 (4-36)||(25297772-25297804)
chr1 (2-34)||(33700815-33700847)
[»] scaffold0211 (1 HSPs)
scaffold0211 (1-36)||(24053-24088)
[»] scaffold0070 (1 HSPs)
scaffold0070 (2-37)||(42562-42597)
[»] chr6 (4 HSPs)
chr6 (1-36)||(12188344-12188379)
chr6 (1-34)||(32613181-32613214)
chr6 (4-36)||(13330087-13330119)
chr6 (4-36)||(34877117-34877149)
[»] chr4 (4 HSPs)
chr4 (1-36)||(27965551-27965586)
chr4 (1-36)||(37109392-37109427)
chr4 (1-36)||(45060978-45061013)
chr4 (3-36)||(46545711-46545744)
[»] scaffold0118 (1 HSPs)
scaffold0118 (3-36)||(41676-41709)


Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 203125 - 203086
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttcaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  203125 cccaagtcaataccactaggccaacccaagtgggttcaaa 203086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14186683 - 14186648
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  14186683 cccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 37788507 - 37788542
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||||||||||||| |||||||||||||||||||    
T  37788507 ccaagtcaataccactgggccaacccaagtgggttc 37788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 16354934 - 16354968
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  16354934 ccaagccaataccactaggccaacccaagtgggtt 16354968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 26989030 - 26988996
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  26989030 ccaagccaataccactaggccaacccaagtgggtt 26988996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 27093403 - 27093437
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  27093403 ccaagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 5499450 - 5499483
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||| |||||||||||||||||||    
T  5499450 caagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4222176 - 4222140
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  4222176 cccaagccaataccactaagccaacccaagtgggttc 4222140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 8796140 - 8796168
Alignment:
Q  8 caataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||    
T  8796140 caataccactaggccaacccaagtgggtt 8796168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11092210 - 11092246
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  11092210 cccaagccaacaccactaggccaacccaagtgggttc 11092246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20994499 - 20994534
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  20994499 cccaagtcaataccactaggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18540333 - 18540296
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttca 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18540333 cccaagccaataccactaggccaacccaagtgggttca 18540296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16852375 - 16852340
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  16852375 cccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19703528 - 19703563
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  19703528 cccaagccaataccactaggccaacccaagtgggtt 19703563  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23874423 - 23874458
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  23874423 cccaagccaataccactaggccaacccaagtgggtt 23874458  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 5264578 - 5264544
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  5264578 ccaagccaataccactaggccaacccaagtgggtt 5264544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2203527 - 2203494
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtggg 34  Q
    |||||| |||||||||||||||||||||||||||    
T  2203527 cccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3624615 - 3624582
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtggg 34  Q
    |||||| |||||||||||||||||||||||||||    
T  3624615 cccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3826820 - 3826853
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    |||| |||||||||||||||||||||||||||||    
T  3826820 caagccaataccactaggccaacccaagtgggtt 3826853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32157226 - 32157189
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttca 38  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  32157226 cccaagtcaataccaccaggccaacccaaatgggttca 32157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 40416432 - 40416466
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||||||||    
T  40416432 ccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34041632 - 34041664
Alignment:
Q  4 aagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||||||    
T  34041632 aagtcaataccactaggccaacccaagtgggtt 34041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42327436 - 42327472
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42327436 cccaagccaataccactaggccaacccaagtgggttc 42327472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 9318122 - 9318153
Alignment:
Q  8 caataccactaggccaacccaagtgggttcaa 39  Q
    ||||||||||||||||||||||||||||||||    
T  9318122 caataccactaggccaacccaagtgggttcaa 9318153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42602589 - 42602554
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  42602589 cccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 42922448 - 42922413
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggttc 37  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42922448 ccaagccaataccactaggccaacccaagtgggttc 42922413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 31703560 - 31703634
Alignment:
Q  118 cactttacttttccaacatgttaaacaacgccgttttgtttctcttcctcattgcaaccttccattgctttctct 192  Q
    ||||| |||| ||||| ||||||||| | ||| ||||||||||||||   |||||||  ||||||||||||||||    
T  31703560 cacttcacttctccaatatgttaaactatgccattttgtttctcttctatattgcaatattccattgctttctct 31703634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 3001412 - 3001383
Alignment:
Q  3 caagtcaataccactaggccaacccaagtg 32  Q
    ||||||||||||||||||||||||||||||    
T  3001412 caagtcaataccactaggccaacccaagtg 3001383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 5147722 - 5147755
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||| ||||||||||||||||    
T  5147722 caagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 4060262 - 4060290
Alignment:
Q  8 caataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||    
T  4060262 caataccactaggccaacccaagtgggtt 4060290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 29503299 - 29503271
Alignment:
Q  8 caataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||    
T  29503299 caataccactaggccaacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3252332 - 3252365
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||||||||||||||||||||    
T  3252332 caagtcaataccactaggccaacccaagtgggtt 3252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21549178 - 21549213
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  21549178 cccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 7918511 - 7918545
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  7918511 ccaagccaataccactaggccaacccaagtgggtt 7918545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 19043492 - 19043458
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  19043492 ccaagtcaatagcactaggccaacccaagtgggtt 19043458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 25627091 - 25627057
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  25627091 ccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21589323 - 21589287
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  21589323 cccaagccaataccaccaggccaacccaagtgggttc 21589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 26078099 - 26078127
Alignment:
Q  8 caataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||||||||||||    
T  26078099 caataccactaggccaacccaagtgggtt 26078127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39499760 - 39499796
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39499760 cccaagccaataccactaggccaacccaagtgggttc 39499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23301643 - 23301678
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  23301643 cccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23552153 - 23552118
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  23552153 cccaagtcaatagcactaggccaacccaagtgggtt 23552118  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25021376 - 25021411
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  25021376 cccaagccaataccactaggccaacccaagtgggtt 25021411  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26459451 - 26459486
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  26459451 cccaagccaataccactaggccaacccaagtgggtt 26459486  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35119418 - 35119383
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35119418 cccaagtcaataccactaggccaacccaaatgggtt 35119383  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39631879 - 39631844
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  39631879 cccaagccaataccactaggccaacccaagtgggtt 39631844  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42836042 - 42836077
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  42836042 cccaagccaataccactaggccaacccaagtgggtt 42836077  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22927511 - 22927477
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggt 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  22927511 cccaagttaataccactaggccaacccaagtgggt 22927477  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41519305 - 41519335
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagt 31  Q
    |||||||||||||||||||||||||||||||    
T  41519305 cccaagtcaataccactaggccaacccaagt 41519335  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 45559234 - 45559200
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  45559234 ccaagccaataccactaggccaacccaagtgggtt 45559200  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 4566472 - 4566501
Alignment:
Q  4 aagtcaataccactaggccaacccaagtgg 33  Q
    ||||||||||||||||||||||||||||||    
T  4566472 aagtcaataccactaggccaacccaagtgg 4566501  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 24513830 - 24513797
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    |||| |||||||||||||||||||||||||||||    
T  24513830 caagccaataccactaggccaacccaagtgggtt 24513797  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31794305 - 31794341
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31794305 cccaagccaataccactaggccaacccaagtgggttc 31794341  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8904449 - 8904414
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8904449 cccaagtcaatactactaggccaacccaagtgggtt 8904414  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9165236 - 9165271
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  9165236 cccaagccaataccactaggccaacccaagtgggtt 9165271  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 36371504 - 36371470
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  36371504 ccaagccaataccactaggccaacccaagtgggtt 36371470  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 38978985 - 38979018
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||||||||||||| ||||||    
T  38978985 caagtcaataccactaggccaacccaaatgggtt 38979018  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 25297804 - 25297772
Alignment:
Q  4 aagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||| ||||||||||||||||    
T  25297804 aagtcaataccactagaccaacccaagtgggtt 25297772  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 33700815 - 33700847
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtggg 34  Q
    ||||| |||||||||||||||||||||||||||    
T  33700815 ccaagccaataccactaggccaacccaagtggg 33700847  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24088 - 24053
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24088 cccaagtcaataccattaggccaacccaagtgggtt 24053  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 42562 - 42597
Alignment:
Q  2 ccaagtcaataccactaggccaacccaagtgggttc 37  Q
    |||||||||||||||||||||||||||| |||||||    
T  42562 ccaagtcaataccactaggccaacccaactgggttc 42597  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12188344 - 12188379
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  12188344 cccaagccaataccactaggccaacccaagtgggtt 12188379  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32613181 - 32613214
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtggg 34  Q
    |||||||||||||||| |||||||||||||||||    
T  32613181 cccaagtcaataccaccaggccaacccaagtggg 32613214  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 13330119 - 13330087
Alignment:
Q  4 aagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||||||||||||||| |||||||||||||||    
T  13330119 aagtcaataccactaggtcaacccaagtgggtt 13330087  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34877117 - 34877149
Alignment:
Q  4 aagtcaataccactaggccaacccaagtgggtt 36  Q
    ||||| |||||||||||||||||||||||||||    
T  34877117 aagtctataccactaggccaacccaagtgggtt 34877149  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27965551 - 27965586
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  27965551 cccaagccaataccactaggccaacccaagtgggtt 27965586  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37109392 - 37109427
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  37109392 cccaagccaataccactaggccaacccaagtgggtt 37109427  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45061013 - 45060978
Alignment:
Q  1 cccaagtcaataccactaggccaacccaagtgggtt 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  45061013 cccaagtcaataccactaggtcaacccaagtgggtt 45060978  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 46545744 - 46545711
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    |||| |||||||||||||||||||||||||||||    
T  46545744 caagccaataccactaggccaacccaagtgggtt 46545711  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 41676 - 41709
Alignment:
Q  3 caagtcaataccactaggccaacccaagtgggtt 36  Q
    |||| |||||||||||||||||||||||||||||    
T  41676 caagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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