View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_high_33 (Length: 261)

Name: NF3622_high_33
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_high_33
NF3622_high_33
[»] chr7 (20 HSPs)
chr7 (1-60)||(26459414-26459473)
chr7 (8-60)||(22760883-22760935)
chr7 (1-60)||(7801193-7801252)
chr7 (1-52)||(23552131-23552182)
chr7 (1-60)||(30442501-30442560)
chr7 (1-60)||(39631857-39631916)
chr7 (1-52)||(21877821-21877872)
chr7 (1-52)||(25021347-25021398)
chr7 (5-60)||(36803631-36803686)
chr7 (1-60)||(41519268-41519327)
chr7 (5-60)||(43215201-43215256)
chr7 (1-59)||(19553467-19553524)
chr7 (1-59)||(25956298-25956355)
chr7 (1-58)||(4566434-4566491)
chr7 (1-49)||(42836016-42836064)
chr7 (1-52)||(39499731-39499782)
chr7 (6-60)||(25655232-25655286)
chr7 (1-59)||(45976928-45976986)
chr7 (1-58)||(5273596-5273653)
chr7 (8-60)||(38374603-38374655)
[»] chr4 (17 HSPs)
chr4 (1-60)||(37109355-37109414)
chr4 (6-59)||(16581711-16581764)
chr4 (3-60)||(38869783-38869840)
chr4 (1-60)||(37274463-37274523)
chr4 (12-59)||(4483306-4483353)
chr4 (1-60)||(7949458-7949517)
chr4 (1-60)||(19680792-19680851)
chr4 (1-60)||(55427204-55427263)
chr4 (6-60)||(23377974-23378028)
chr4 (8-61)||(24827845-24827898)
chr4 (8-60)||(11592157-11592209)
chr4 (5-60)||(7292802-7292857)
chr4 (5-52)||(31759670-31759717)
chr4 (1-60)||(47044730-47044789)
chr4 (1-60)||(49576898-49576957)
chr4 (4-52)||(8030216-8030264)
chr4 (8-60)||(28635716-28635768)
[»] chr2 (19 HSPs)
chr2 (1-60)||(42327399-42327458)
chr2 (1-58)||(42602567-42602624)
chr2 (1-60)||(29503284-29503343)
chr2 (1-60)||(40416394-40416453)
chr2 (1-58)||(16918584-16918641)
chr2 (8-60)||(39715012-39715064)
chr2 (5-52)||(12994388-12994435)
chr2 (5-60)||(28846708-28846763)
chr2 (1-60)||(37480088-37480147)
chr2 (1-58)||(34041594-34041651)
chr2 (8-60)||(21213789-21213841)
chr2 (1-60)||(42922427-42922487)
chr2 (1-52)||(12086141-12086192)
chr2 (9-60)||(19244130-19244181)
chr2 (1-60)||(23052527-23052586)
chr2 (5-55)||(1729833-1729883)
chr2 (1-58)||(11251100-11251157)
chr2 (12-60)||(4262306-4262354)
chr2 (4-60)||(21195680-21195736)
[»] chr1 (20 HSPs)
chr1 (3-60)||(16169982-16170039)
chr1 (5-60)||(11063573-11063628)
chr1 (1-60)||(36371483-36371542)
chr1 (1-59)||(9165200-9165258)
chr1 (1-60)||(8177186-8177245)
chr1 (1-52)||(31794276-31794327)
chr1 (1-60)||(33700777-33700836)
chr1 (7-52)||(10526842-10526887)
chr1 (8-44)||(1690097-1690133)
chr1 (4-60)||(6122810-6122866)
chr1 (4-60)||(14787340-14787396)
chr1 (1-60)||(2799875-2799934)
chr1 (1-60)||(6650608-6650667)
chr1 (5-60)||(15786324-15786379)
chr1 (1-52)||(42787221-42787272)
chr1 (1-60)||(52336778-52336837)
chr1 (12-60)||(3265948-3265996)
chr1 (8-52)||(9643821-9643865)
chr1 (6-50)||(44046162-44046206)
chr1 (8-60)||(52029941-52029993)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-60)||(19966-20025)
[»] chr8 (21 HSPs)
chr8 (1-52)||(2203505-2203556)
chr8 (1-60)||(3624593-3624652)
chr8 (1-60)||(16852353-16852412)
chr8 (1-60)||(19703491-19703550)
chr8 (8-60)||(22193368-22193420)
chr8 (1-60)||(968375-968434)
chr8 (1-60)||(18540311-18540370)
chr8 (1-60)||(23874386-23874445)
chr8 (1-60)||(35690068-35690127)
chr8 (1-43)||(20994479-20994521)
chr8 (6-59)||(6536538-6536591)
chr8 (4-65)||(11819792-11819853)
chr8 (1-58)||(44780120-44780177)
chr8 (1-60)||(12988441-12988500)
chr8 (8-59)||(23361654-23361705)
chr8 (1-64)||(26688878-26688941)
chr8 (1-48)||(32157204-32157251)
chr8 (18-59)||(3524406-3524447)
chr8 (18-58)||(11793527-11793567)
chr8 (8-60)||(27750750-27750802)
chr8 (8-52)||(28783080-28783124)
[»] chr5 (16 HSPs)
chr5 (5-60)||(34984823-34984878)
chr5 (8-60)||(16773827-16773879)
chr5 (1-60)||(7918473-7918532)
chr5 (5-60)||(18596005-18596060)
chr5 (1-60)||(25627070-25627129)
chr5 (5-52)||(30883210-30883257)
chr5 (1-58)||(87429-87486)
chr5 (1-60)||(14285174-14285233)
chr5 (1-52)||(16457823-16457874)
chr5 (1-44)||(21549157-21549200)
chr5 (1-60)||(21589301-21589360)
chr5 (1-59)||(892479-892537)
chr5 (1-59)||(19043471-19043529)
chr5 (8-60)||(6844749-6844801)
chr5 (8-52)||(14495817-14495861)
chr5 (6-58)||(37148044-37148096)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-59)||(94976-95034)
[»] chr6 (12 HSPs)
chr6 (1-50)||(12188317-12188366)
chr6 (8-60)||(6385882-6385934)
chr6 (8-60)||(10338178-10338230)
chr6 (8-60)||(33549124-33549176)
chr6 (1-60)||(12234511-12234570)
chr6 (17-60)||(23910115-23910158)
chr6 (1-52)||(24507548-24507599)
chr6 (1-60)||(34444816-34444875)
chr6 (8-58)||(31622997-31623047)
chr6 (4-60)||(20213057-20213113)
chr6 (4-60)||(22107080-22107136)
chr6 (8-60)||(24641194-24641246)
[»] chr3 (16 HSPs)
chr3 (1-58)||(7975431-7975488)
chr3 (1-60)||(4222154-4222213)
chr3 (1-60)||(14186661-14186719)
chr3 (1-60)||(30311319-30311378)
chr3 (1-48)||(32651454-32651501)
chr3 (1-60)||(37788469-37788528)
chr3 (1-58)||(27093367-27093424)
chr3 (8-44)||(12761532-12761568)
chr3 (1-60)||(16354896-16354955)
chr3 (5-59)||(53412962-53413016)
chr3 (1-58)||(31520611-31520668)
chr3 (1-50)||(46518641-46518690)
chr3 (8-52)||(4844523-4844567)
chr3 (8-52)||(4870219-4870263)
chr3 (4-60)||(8075131-8075187)
chr3 (1-60)||(10445143-10445203)
[»] scaffold0258 (1 HSPs)
scaffold0258 (8-60)||(15327-15379)
[»] scaffold0337 (1 HSPs)
scaffold0337 (1-52)||(1766-1817)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-60)||(6923-6982)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-60)||(42524-42583)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-52)||(12202-12253)
[»] scaffold0194 (1 HSPs)
scaffold0194 (8-60)||(13050-13102)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26459473 - 26459414
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||    
T  26459473 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 26459414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22760883 - 22760935
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  22760883 gtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 22760935  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7801193 - 7801252
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| |||||||||||||||||||||||||| || ||||| ||||||||| |||||||    
T  7801193 tggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcg 7801252  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23552131 - 23552182
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  23552131 tggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtct 23552182  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30442501 - 30442560
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| |||||||||| |||||||||||||||| || ||||||||||||||| |||||||    
T  30442501 tggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcg 30442560  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39631857 - 39631916
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||||||||||||  | ||||||||||||||| |||||||    
T  39631857 tggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcg 39631916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21877821 - 21877872
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||||||||||||||||||  || ||||||| |||||||    
T  21877821 tggcctagtggtattgacttgggacctgggagggtgctcctccttaaggtct 21877872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25021398 - 25021347
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||||||| |||||||||||||||| || |||||||||| ||||    
T  25021398 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtct 25021347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 36803686 - 36803631
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||||||||||||||| || |||||||||| || ||| |||||    
T  36803686 ctagtggtattgacttgggacctgggagtatgctcctcctcaaagttttaagttcg 36803631  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41519327 - 41519268
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||||||||||  | ||||| || ||||||||||||||| |||||||    
T  41519327 tggcctagtggtattgacttgggatttaggagtgtgctcctcctcaaggtctcaggttcg 41519268  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 43215201 - 43215256
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||| |||||||||| ||||| || ||||||||||||||| |||||||    
T  43215201 ctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcg 43215256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19553467 - 19553524
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||| ||||||||| ||||| |||||||||| || ||||||||||||||||||||||    
T  19553467 tggcctggtggtattggcttgg-acctgggagtgtgctcctcctcaaggtcttaggttc 19553524  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25956355 - 25956298
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||| |||||||||| ||||| || |||| |||||||||||||||||    
T  25956355 tggcctagtggtattggcttgggaccttggagtgtgctcct-ctcaaggtcttaggttc 25956298  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4566491 - 4566434
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||||||||| |||||| ||||| | ||||| |||||||||| |||||    
T  4566491 tggcctagtggtattgacttcggaccttggagtgtattccttctcaaggtctcaggtt 4566434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42836064 - 42836016
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaagg 49  Q
    |||||||||||||||| |||||||||||||||| || || |||||||||    
T  42836064 tggcctagtggtattggcttgggacctgggagtgtgctcttcctcaagg 42836016  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39499782 - 39499731
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||||||| ||||||||||| |||| |||||||| | |||||||    
T  39499782 tggcctagtggtattggcttgggacctgtgagtgtgttcctctttaaggtct 39499731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 25655286 - 25655232
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||||| ||| |||| || ||||||||||||| | |||||||    
T  25655286 tagtggtattgacttgggatctgtgagtgtgatcctcctcaaggtttcaggttcg 25655232  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45976986 - 45976928
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||| |||| ||||||||||| || ||||||| ||||| ||| ||||    
T  45976986 tggcctagtggtattggcttgtgacctgggagtgtgctcctccttaaggttttaagttc 45976928  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5273653 - 5273596
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||| ||||| ||| ||||||||||  |||| || |||||||||||||||||||||    
T  5273653 tggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtt 5273596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38374655 - 38374603
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| ||| ||||||||||  |||| || |||||||||||||||||||||||    
T  38374655 gtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcg 38374603  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37109414 - 37109355
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||    
T  37109414 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 37109355  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 16581711 - 16581764
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||    
T  16581711 tagtggtattggcttggaacctgggagtctgctcctcctcaaggtctcaggttc 16581764  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 38869783 - 38869840
Alignment:
Q  3 gcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||| ||||||| |||||||| || ||||||||||||||| |||||||    
T  38869783 gcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcg 38869840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37274523 - 37274463
Alignment:
Q  1 tggcctagtggta-ttgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||    
T  37274523 tggcctagtcgtaattggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcg 37274463  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 4483353 - 4483306
Alignment:
Q  12 tattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  4483353 tattgacttgggacctgagagtctgatcctcctcaaggtctcaggttc 4483306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7949517 - 7949458
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||| ||||||| |||||||||| ||||| || ||||||||||||||| |||||||    
T  7949517 tggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcg 7949458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19680851 - 19680792
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||  |||||||| ||||||| || || ||||||||||||||||||||    
T  19680851 tggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtcttaggttcg 19680792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55427263 - 55427204
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| ||||||||||||||||||| |||| ||| |||||| |||||||    
T  55427263 tggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcg 55427204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 23377974 - 23378028
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| ||||| |||||||||||||||| || ||||||||||||||| |||||||    
T  23377974 tagtgttattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 23378028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 24827845 - 24827898
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcgg 61  Q
    ||||||||||||||||||||||||||  | |||||||| |||||| ||||||||    
T  24827845 gtggtattgacttgggacctgggagtgcgctcctcctcgaggtctcaggttcgg 24827898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 11592209 - 11592157
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| ||||||||||| |||| || |||||||| ||||||||||||||    
T  11592209 gtggtattgccttgggacctgagagtgtgctcctcctccaggtcttaggttcg 11592157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 7292857 - 7292802
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||| ||||| |||||||||| || |||||||||| |||| |||||||    
T  7292857 ctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcg 7292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 31759717 - 31759670
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||| |||||||| ||||||| || |||||||||||||||    
T  31759717 ctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31759670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47044730 - 47044789
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||||||||||| ||| |||| || |||||||| |||||| |||||||    
T  47044730 tggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcg 47044789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49576957 - 49576898
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| ||| |||| ||||||| || ||||||||||||||| |||||||    
T  49576957 tggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcg 49576898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 8030264 - 8030216
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||| | |||||||| ||||||| || |||||||||||||||    
T  8030264 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtct 8030216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 28635716 - 28635768
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| |||||||||| |||||||| || |||||||  ||||||||||||||    
T  28635716 gtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcg 28635768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42327458 - 42327399
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||    
T  42327458 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 42327399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42602567 - 42602624
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||    
T  42602567 tggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtt 42602624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29503284 - 29503343
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||  ||||||||||||||| || ||||||||||||||| |||||||    
T  29503284 tggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 29503343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40416453 - 40416394
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||| |||||||||| || ||||||| ||||||| |||||||    
T  40416453 tggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcg 40416394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16918641 - 16918584
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    ||||||||||||||||  |||||| |||||||| || |||||||||||||||||||||    
T  16918641 tggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggtt 16918584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 39715012 - 39715064
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||||||| || |||||||| |||||| |||||||    
T  39715012 gtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 39715064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 12994435 - 12994388
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||    
T  12994435 ctagtggtattgacttgggacctgggagtgtgctcctccttaaggtct 12994388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 28846708 - 28846763
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||||||||||||||| || |||||||| | |||| |||||||    
T  28846708 ctagtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcg 28846763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37480088 - 37480147
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| ||||||||||| |||| || ||||||||||||||| |||||||    
T  37480088 tggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcg 37480147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34041651 - 34041594
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||||||||| ||| ||| |||| || ||||||||||||||| |||||    
T  34041651 tggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtt 34041594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 21213789 - 21213841
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| |||||||    
T  21213789 gtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcg 21213841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42922427 - 42922487
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctc-aaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| |||||||||| || |||||||| ||||||| |||||||    
T  42922427 tggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggttcg 42922487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12086192 - 12086141
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||| ||||||||| |||||||||||| ||| || |||||||||||||||    
T  12086192 tggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtct 12086141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 19244130 - 19244181
Alignment:
Q  9 tggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||| |||| || |||||| |||||||| |||||||    
T  19244130 tggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcg 19244181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23052586 - 23052527
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| |||||||| ||||||| || | ||||||||||||| |||||||    
T  23052586 tggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcg 23052527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 1729833 - 1729883
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttag 55  Q
    |||||||||||| |||||||| ||||||| || |||||||| |||||||||    
T  1729833 ctagtggtattggcttgggacttgggagtgtgctcctcctctaggtcttag 1729883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11251100 - 11251157
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||| ||||||||||| |||||||| ||| ||| || ||||||||||||||| |||||    
T  11251100 tggcttagtggtattggcttgggacttggaagtgtgctcctcctcaaggtctcaggtt 11251157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 4262354 - 4262306
Alignment:
Q  12 tattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| |||||||||||| ||| || ||||||||||||||| |||||||    
T  4262354 tattggcttgggacctggcagtgtgctcctcctcaaggtctcaggttcg 4262306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 21195736 - 21195680
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||| | ||||| || ||||||| || ||||||||||||||| |||||||    
T  21195736 cctagtggtataggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcg 21195680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 16170039 - 16169982
Alignment:
Q  3 gcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  16170039 gcctggtggtattgacttgggacctgggagtgtgttcctcctcaaggtttcaggttcg 16169982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 11063573 - 11063628
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||| |||||||||||  ||| ||||||||||||||||||||||||||    
T  11063573 ctagtggtattggcttgggacctgaaagtgtgttcctcctcaaggtcttaggttcg 11063628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36371483 - 36371542
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| |||||||||| || ||||||||||||||| |||||||    
T  36371483 tggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcg 36371542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9165258 - 9165200
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||| |||||||||||||||| || |||||||||| |||| ||||||    
T  9165258 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttc 9165200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8177245 - 8177186
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||| |||||||| || ||||||||||||| | |||||||    
T  8177245 tggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcg 8177186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31794327 - 31794276
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||||||| |||||||| ||||||| || |||||||||||||||    
T  31794327 tggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31794276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33700836 - 33700777
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| | |||||||| || ||||||||||||||| |||||||    
T  33700836 tggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcg 33700777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 10526842 - 10526887
Alignment:
Q  7 agtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||| |||||||||||||||| || |||||||||||||||    
T  10526842 agtggtattggcttgggacctgggagtttgctcctcctcaaggtct 10526887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1690133 - 1690097
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcct 44  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1690133 gtggtattggcttgggacctgggagtctgttcctcct 1690097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 6122810 - 6122866
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||| | |||||||| ||||||| || ||||||||||||||| |||||||    
T  6122810 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcg 6122866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 14787396 - 14787340
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||| |||||| |||| |||| ||||||||||| | |||||||    
T  14787396 cctagtggtattgacttgagacctgagagtgtgtttctcctcaaggtgtcaggttcg 14787340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2799875 - 2799934
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||| | |||| || |||||||| || ||||||||||||||| |||||||    
T  2799875 tggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcg 2799934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6650608 - 6650667
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||| | |||||| || |||||||||| |||| |||||||    
T  6650608 tggcctagtggtattggcttgggatcggggagtatgctcctcctcaatgtctcaggttcg 6650667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15786379 - 15786324
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| |||||| ||||||| |||||||| || ||||||||||||||| |||||||    
T  15786379 ctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcg 15786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42787221 - 42787272
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||||||||||| || ||||  |||||||||||| ||||    
T  42787221 tggcctagtggtattgacttgggacttgagagtgcgttcctcctcaaagtct 42787272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52336837 - 52336778
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||| |||||||| || ||||||| ||| ||| |||||||    
T  52336837 tggcctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttcg 52336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 3265948 - 3265996
Alignment:
Q  12 tattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||| || ||||||| || ||||||||||||||| |||||||    
T  3265948 tattgacttggaacttgggagtgtgctcctcctcaaggtctcaggttcg 3265996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 9643865 - 9643821
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  9643865 gtggtattggcttgggatctgggagtgtgttcatcctcaaggtct 9643821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 44046206 - 44046162
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggt 50  Q
    ||||||||||| ||||||| |||||||| || |||||||||||||    
T  44046206 tagtggtattggcttgggatctgggagtgtgctcctcctcaaggt 44046162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 52029993 - 52029941
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||| ||||| ||||| || |||| |||||||||| |||||||    
T  52029993 gtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcg 52029941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20025 - 19966
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| |||||||||| || ||||||||||||||| |||||||    
T  20025 tggcctagtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcg 19966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2203505 - 2203556
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||||    
T  2203505 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtct 2203556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3624593 - 3624652
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| || ||||| ||||||||| |||||||    
T  3624593 tggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcg 3624652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16852353 - 16852412
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| || |||||||| |||||| |||||||    
T  16852353 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 16852412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19703550 - 19703491
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||||||| |||| || ||||||||||||||| |||||||    
T  19703550 tggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcg 19703491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 22193420 - 22193368
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| |||||||||| ||||||||| || |||||||||||||||||||||||    
T  22193420 gtggtgttgacttggggcctgggagtgtgctcctcctcaaggtcttaggttcg 22193368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 968375 - 968434
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| |||||||||||||||| || |||||||| |||||| |||||||    
T  968375 tggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 968434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18540311 - 18540370
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||||| |  | ||||||||||||| |||||||    
T  18540311 tggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcg 18540370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23874445 - 23874386
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||||||| ||||  ||||||| |||||| |||||||    
T  23874445 tggcctagtggtattggcttgggacctgggaatctgcgcctcctcgaggtctcaggttcg 23874386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35690127 - 35690068
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||| ||||| || || ||||||||||||||| |||||||    
T  35690127 tggcctagtggtattggcttgggatctgggtgtttgctcctcctcaaggtctcaggttcg 35690068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20994521 - 20994479
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcc 43  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  20994521 tggcctagtggtattgacttgggacctgggagtgtgctcctcc 20994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 6536538 - 6536591
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    ||||||||||| |||||||||| ||||| || ||||||||||||||| ||||||    
T  6536538 tagtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttc 6536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 11819792 - 11819853
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcggttca 65  Q
    ||||||||||| | |||||||| ||||||| || ||||||||||||||| ||||||| ||||    
T  11819792 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattca 11819853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44780177 - 44780120
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    ||||||||||| |||| |||||||| ||||||| || ||||||||||||||| |||||    
T  44780177 tggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 44780120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12988441 - 12988500
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| |||||| ||| || ||||||||||||| | |||||||    
T  12988441 tggcctagtggtattggcttggaacctggaagtgtgctcctcctcaaggtttcaggttcg 12988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 23361705 - 23361654
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||||  ||||||| || ||||||||||||||| ||||||    
T  23361705 gtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttc 23361654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26688878 - 26688941
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcggttc 64  Q
    |||||| ||||| ||| |||||||||| ||||| || ||||||||||||||| |||||| ||||    
T  26688878 tggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttcagttc 26688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32157204 - 32157251
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaag 48  Q
    |||||| |||||||||||||||||||| ||||| || |||||||||||    
T  32157204 tggcctggtggtattgacttgggaccttggagtatgctcctcctcaag 32157251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3524447 - 3524406
Alignment:
Q  18 cttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||| ||||| || ||||||||||||||||||||||    
T  3524447 cttgggaccttggagtgtgctcctcctcaaggtcttaggttc 3524406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 11793567 - 11793527
Alignment:
Q  18 cttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  11793567 cttgggaccttggagtgtgctcctcctcaaggtcttaggtt 11793527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27750750 - 27750802
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||| | |||||||| ||||||| || ||||||||||||||| |||||||    
T  27750750 gtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcg 27750802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 28783080 - 28783124
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||| |||| ||||||||||| || |||||||||||||||    
T  28783080 gtggtattggcttgagacctgggagtgtgctcctcctcaaggtct 28783124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 34984823 - 34984878
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||| ||||| |||||||||| || |||||||||||||||||||||||    
T  34984823 ctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcg 34984878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 16773827 - 16773879
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||||||| || |||||||| |||||| |||||||    
T  16773827 gtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 16773879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7918532 - 7918473
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| ||||||||||    |||||||||||||||||||||||    
T  7918532 tggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcg 7918473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 18596060 - 18596005
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||| |||| ||||||||| | || |||||||||||||||||||||||    
T  18596060 ctagtggtattggcttgtgacctgggaatgtgctcctcctcaaggtcttaggttcg 18596005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25627070 - 25627129
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| || ||||||| || ||||||||||||||| |||||||    
T  25627070 tggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcg 25627129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 30883257 - 30883210
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||| |||||||||||||||| || |||||||||||||||    
T  30883257 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtct 30883210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 87486 - 87429
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||||| ||||| | |||||||| || ||||||||||||||| |||||    
T  87486 tggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtctcaggtt 87429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14285174 - 14285233
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| ||||| |||| ||||| |||||||||| || ||||||||||||||| |||||||    
T  14285174 tggccgagtggaattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcg 14285233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16457823 - 16457874
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||| ||||||||| |||||||||| ||||| || |||||||||||||||    
T  16457823 tggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtct 16457874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21549200 - 21549157
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcct 44  Q
    |||||||||||||||| |||||||||||||||| || |||||||    
T  21549200 tggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21589301 - 21589360
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||| ||||||||||||||||||| | |||||| | |||| |||||||    
T  21589301 tggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcg 21589360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 892537 - 892479
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||| ||||||||||  |||| |  ||||||||||||||| ||||||    
T  892537 tggcctagtggtattggcttgggacctcagagtgtactcctcctcaaggtctcaggttc 892479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19043471 - 19043529
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||| ||||||||||| || ||||||| ||||||| ||||| |||| ||||||    
T  19043471 tggcctagtgctattgacttggaacttgggagtgtgttccttctcaaagtctcaggttc 19043529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 6844749 - 6844801
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||| |  ||||||| ||||||||||| |||||| |||||||    
T  6844749 gtggtattgacttggaatttgggagtgtgttcctcctcgaggtctaaggttcg 6844801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 14495861 - 14495817
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||    
T  14495861 gtggtattgacttgggatctgggagtgtgctcctcctcgaggtct 14495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 37148044 - 37148096
Alignment:
Q  6 tagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    ||||||||||||| || |||||| |||| || ||||||||||||||| |||||    
T  37148044 tagtggtattgacctgagacctgtgagtgtgctcctcctcaaggtctcaggtt 37148096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 95034 - 94976
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||||||| ||||| |||||||||| || ||||||||||||||| ||||||    
T  95034 tggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttc 94976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12188366 - 12188317
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggt 50  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||    
T  12188366 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggt 12188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 6385882 - 6385934
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||||| | || ||||||| ||||||| |||||||    
T  6385882 gtggtattgacttgggacctgggactgtgctcctccttaaggtctcaggttcg 6385934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 10338230 - 10338178
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| |||||||||| ||||| || ||||||||||||||| |||||||    
T  10338230 gtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcg 10338178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33549124 - 33549176
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| |||||||||||||||| || |||||||| |||||| |||||||    
T  33549124 gtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 33549176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12234570 - 12234511
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| |||||||||||||||||||||||||| || |||  ||| |||||| |||||||    
T  12234570 tggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcg 12234511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 23910158 - 23910115
Alignment:
Q  17 acttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||| || ||||||||||||||| |||||||    
T  23910158 acttgggacctgggagtgtgctcctcctcaaggtctcaggttcg 23910115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24507599 - 24507548
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||| ||| |||||||||| ||||| || |||||||||||||||    
T  24507599 tggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 24507548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34444816 - 34444875
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||| ||||||||||||||||||||  |||| || |||||| |||||||| |||||||    
T  34444816 tggcctggtggtattgacttgggaccttagagtgtgctcctccccaaggtctcaggttcg 34444875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 31623047 - 31622997
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    ||||||||| |||||||||||||||| || |||||||| |||||| |||||    
T  31623047 gtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtt 31622997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 20213057 - 20213113
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||   |||||||||||||||| || |||||||||| |||| |||||||    
T  20213057 cctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcg 20213113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 22107080 - 22107136
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||   |||||||||||||||| || |||||||||| |||| |||||||    
T  22107080 cctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcg 22107136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 24641246 - 24641194
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||||||||| |||||||| || |||||||| |||| | |||||||    
T  24641246 gtggtattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcg 24641194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7975431 - 7975488
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||| | ||||||| |||||||| || |||||||||||||||||||||    
T  7975431 tggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtcttaggtt 7975488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4222154 - 4222213
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||| ||||||||||| ||||||| |||||||| || |||||||||| ||||||||||||    
T  4222154 tggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcg 4222213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14186661 - 14186719
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| |||||||||| ||||| || ||||||||||||||| |||||||    
T  14186661 tggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcg 14186719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30311319 - 30311378
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||| | ||||||| |||||||| || ||||||||||||||| |||||||    
T  30311319 tggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcg 30311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32651501 - 32651454
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaag 48  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||    
T  32651501 tggcctagtggtattggcttgggacctgggagtgtgctcctcctcaag 32651454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37788528 - 37788469
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||| |||||||||||||||| |||| ||||| || ||||||||||||||| |||||||    
T  37788528 tggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcg 37788469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27093424 - 27093367
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||||||||||||| ||||| || ||||||| || ||||||||||||||| |||||    
T  27093424 tggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtt 27093367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 12761532 - 12761568
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcct 44  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12761532 gtggtattgacttgggacctgggagtgtgttcctcct 12761568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16354955 - 16354896
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||| ||||| |||| || ||||||||| ||||| |||||||    
T  16354955 tggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcg 16354896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 53412962 - 53413016
Alignment:
Q  5 ctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttc 59  Q
    |||||||||||| ||||  |||||||||| || ||||||||||||||| ||||||    
T  53412962 ctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttc 53413016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31520668 - 31520611
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggtt 58  Q
    |||||| |||| |||| ||||||| |||||||| || |||||||| ||||||||||||    
T  31520668 tggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtt 31520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46518641 - 46518690
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggt 50  Q
    |||| ||||||||||| ||||||| |||||||| || |||||||||||||    
T  46518641 tggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggt 46518690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4844567 - 4844523
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||    
T  4844567 gtggtattgacttgggatctgggagtgtgctcctcctcgaggtct 4844523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4870263 - 4870219
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||    
T  4870263 gtggtattgacttgggatctgggagtgtgctcctcctcgaggtct 4870219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 8075187 - 8075131
Alignment:
Q  4 cctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||| | |||||||| ||||||| || ||||||||||||| | |||||||    
T  8075187 cctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtttcaggttcg 8075131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10445203 - 10445143
Alignment:
Q  1 tggcctagtggta-ttgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||||| | ||| |||||||||||||||| || |||||||| |||||| |||||||    
T  10445203 tggcctagtggcaattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 10445143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 15379 - 15327
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| |||||||||||||||| || |||||||| |||||| |||||||    
T  15379 gtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcg 15327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1766 - 1817
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||| ||| |||||||||| ||||| || |||||||||||||||    
T  1766 tggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 1817  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6982 - 6923
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||| ||||||||  |||||| || |||||||||| |||| |||||||    
T  6982 tggcctagtggtattggcttgggactggggagtgtgctcctcctcaaagtctcaggttcg 6923  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42583 - 42524
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    |||||||||||||||||||||| | |||||||| || |||||||||  |||| |||||||    
T  42583 tggcctagtggtattgacttggaatctgggagtatgctcctcctcagagtctcaggttcg 42524  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12202 - 12253
Alignment:
Q  1 tggcctagtggtattgacttgggacctgggagtctgttcctcctcaaggtct 52  Q
    |||||||||||| ||| |||||||||| ||||| || |||||||||||||||    
T  12202 tggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 12253  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 13102 - 13050
Alignment:
Q  8 gtggtattgacttgggacctgggagtctgttcctcctcaaggtcttaggttcg 60  Q
    ||||||||| |||| || |||||||| || ||||||||||||||| |||||||    
T  13102 gtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcg 13050  T

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