View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_high_4 (Length: 558)
Name: NF3622_high_4
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 1185104 - 1185635
Alignment:
| Q |
19 |
ataagtggtataattaaaatcacaccttgcccttggaatgtagaatcatacctggttcannnnnnnnn--ggacaacttgttcataatgctttcttgttt |
116 |
Q |
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| T |
1185104 |
ataagtggtataattaaaatcacaccttgcccttggaatgtagaatcatacctggttcatttttttttttggataacttgttcataatgcttttttgttt |
1185203 |
T |
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| Q |
117 |
ttaaactttt-cttattctggtgtatgatagaatccgagaaacatagtttagagaagcataccagaaaatctctctcagtgaaagtagggggaatcaagt |
215 |
Q |
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| T |
1185204 |
ttaaactttttcttattctggtgtatgatagaatccgagaaacatagtttagagaagcataccagaaaatctctctcagtgaaagtagggggaatcaagt |
1185303 |
T |
|
| Q |
216 |
gtatggtagaaagtcattatatatcccatcaagattttcctgaggtaataatcaatcatcaatgattattttttggatttaatttgtatatattgtcact |
315 |
Q |
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| T |
1185304 |
gtatggtagaaagtcattatatatccaatcaagattttcttgaggtaataatcaatcatcaatgattattttttggatttaatttgtatatattgtcact |
1185403 |
T |
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| Q |
316 |
gtaaaacttttttaactacacttatcgcgataataatcaactttacactgcaagtgcataacaattaatcttttatctgtaagattttctgctagttctc |
415 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1185404 |
gtaaaacttttttaactgcacttatcgtgataataatcaactttacactgcaagtgcataacaattaatcttttatctgtaagattttctgctagttctc |
1185503 |
T |
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| Q |
416 |
attttatgcgtgcctattgttattgaagctattagtttcaatgtcattttgataactccagaaactcatgtgaaattcaactttaataaattttatggaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
1185504 |
attttatgcgtgcctattgttattgaagctattagtttcaatgtcattttgataactccagaaactcatgtgaaattcagctctaataaattttatggaa |
1185603 |
T |
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| Q |
516 |
tgggaatctttcatgtgtgtatgatgatgatg |
547 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
1185604 |
tgggaaactttcatgtgtgtatgatgatgatg |
1185635 |
T |
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