View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_high_40 (Length: 238)
Name: NF3622_high_40
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 35908591 - 35908377
Alignment:
| Q |
17 |
agaaaatggtgtgattccaccttttattcttctttgtcactcattgtatctctatttttgcaaatcttctcgattttccagcaattgaaacattttataa |
116 |
Q |
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| T |
35908591 |
agaaaatggtgtgattccaccttttcttcttctttgtcactcattgtatctctatttttgcaaatcttctcgattttccagcaattgaaacattttatga |
35908492 |
T |
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| Q |
117 |
gagtaagnnnnnnnnnnnnnctttgttgaaaggggttagaacataattgtttacaccacataaaagggaataaaagacttcgataaaagaagataattgc |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35908491 |
gagtaag-ttttttgtttttctttgttgaaaggggttagaacataattgtttacaccacataaaagggaataaaagacttcaataaaagaagataattgc |
35908393 |
T |
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| Q |
217 |
tcctctcccttttctt |
232 |
Q |
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|||||||||||||||| |
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| T |
35908392 |
tcctctcccttttctt |
35908377 |
T |
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