View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_high_41 (Length: 238)
Name: NF3622_high_41
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10599240 - 10599020
Alignment:
| Q |
1 |
ttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagattttttgattatgtttcatgaaatatccaccttgaagtataattatattgtcg |
100 |
Q |
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| T |
10599240 |
ttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagatttttttattatgtttcatgaaatatccaccttaaagtataattat--tgtcg |
10599143 |
T |
|
| Q |
101 |
annnnnnnnngagttagtgcttcttcgttattgttcatttcattgggtgattttgaaagcaaaattaaatcaacctaaattatgaaacctaaactcagat |
200 |
Q |
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| T |
10599142 |
atttttttt-gagttagtgcttcttcgttattgttcatttcattgggtgattttgaaagcaaaattaaatcaacctaaattatgaaacctaaactcagat |
10599044 |
T |
|
| Q |
201 |
tattattttccaatgttttgtaac |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
10599043 |
tattattttccaatgttttataac |
10599020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6255011 - 6255230
Alignment:
| Q |
1 |
ttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagattttttgattatgtttcatgaaatatccaccttgaagtataattatattgtcg |
100 |
Q |
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|||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
6255011 |
ttttaatcaagcttatgtatcagacttggcaagtagtctgaatgagatattttgattatgtttcatgaaatatccaccttaaagtataattat--tgtcg |
6255108 |
T |
|
| Q |
101 |
annnnnnnnngagttagtgcttcttcgttattgttcatttcattgggtgattttgaaagcaaaattaaatcaacctaaattatgaaacctaaactcagat |
200 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
6255109 |
actttttt--gcgttagtgcttcttcgttattgttcatttcattgggtgattttgaaagcaaaattaagtcaacctaaactatgaaacctaaactcagat |
6255206 |
T |
|
| Q |
201 |
tattattttccaatgttttgtaac |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
6255207 |
tattattttccaatgttttataac |
6255230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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