View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_low_13 (Length: 382)
Name: NF3622_low_13
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 39014158 - 39014534
Alignment:
| Q |
1 |
tcatcataattatagtcactgcactctttctcttctaacatttcattgtaataattggtttcaatggtttcatataattgttggtctcttgcctcgactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
39014158 |
tcatcataattatagtcactgcactctttctcttctaacatttcattgtaataattggtttcaatagtatcatataattgttggtctcttgcctcgactt |
39014257 |
T |
|
| Q |
101 |
tatcagttatatcatttgcgtttgagtcaaccttggatgataattccacaggaatttcttttggaccgtgattttgagggtcaaaaccataaattatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39014258 |
tatcagttatatcatttgcgtttgagtcaaccttggatgataattccacaggaatttcttttggaccgtgattttgagggtcaaaaccataaattatacg |
39014357 |
T |
|
| Q |
201 |
ggcttcttctttgatatctgccctagtttgagaaactacattcagtttatttttcttagtgtggatgttagtgactatcttgctgcaaacaatttctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39014358 |
ggcttcttctttgatatctgccctagtttgagaaactacattcagtttatttttcttagtgtggatgttagtgactatcttgctgcaaacaatttctttg |
39014457 |
T |
|
| Q |
301 |
ttaagttgattagtagtgtgaaatttattcaattgtgcggtattgtttatggtctccctgtctatacttctctgctc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39014458 |
ttaagttgattagtagtgtgaaatttattcaattgtgcggtattgtttatggtctccctgtctatacttctcggctc |
39014534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University