View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_14 (Length: 376)
Name: NF3622_low_14
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 31161303 - 31160964
Alignment:
| Q |
18 |
caactataggatgatccgaagctttaacattgtttgttccaccaacaatagatacagaacccttatgattcttcaaacgaagagttagcttcgcaatcga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31161303 |
caactataggatgatccgaagctttaacattgtttgttccaccaacaatagatacagaacccttatgattcttcaaacgaagagttagcttcgcaatcga |
31161204 |
T |
|
| Q |
118 |
aatgcttcgaagcccatcaagactagaggtgatggaagtaccttcagcaattccaactagtttagaggatctatttgatgttagagtcaaaggatcttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31161203 |
aatgcttcgaagcccatcaagactagaggtgatggaagtaccttcagcaattccaactagtttagaggatctatttgatgttagagtcaaaggatcttga |
31161104 |
T |
|
| Q |
218 |
aacacaaataatgttccaaaaggtgttgttgtttgtgtgactccagcatttccttttataccattcactataatataacctgttttgtttattgtctcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31161103 |
aacacaaataatgttccaaaaggtgttgttgtttgtgtgactccagcatttccttttataccattcactataatataacctgttttgtttattgtctcat |
31161004 |
T |
|
| Q |
318 |
gttggtaaagtgaaaagtgaatggatttgaggttattgtt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31161003 |
gttggtaaagtgaaaagtgaatggatttgaggttattgtt |
31160964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 31221253 - 31220915
Alignment:
| Q |
18 |
caactataggatgatccgaagctttaacattgtttgttccaccaacaatagatacagaacccttatgattcttcaaacgaagagttagcttcgcaatcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31221253 |
caactataggatgatccgaagctttaacattgtttgttccaccaacaatagatacagaacccttatgatttttcaaacgaagagttagcttcgcaatcga |
31221154 |
T |
|
| Q |
118 |
aatgcttcgaagcccatcaagactagaggtgatggaagtaccttcagcaattccaactagtttagaggatctatttgatgttagagtcaaaggatcttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221153 |
aatgcttcgaagcccatcaagactagaggtgatggaagtaccttcagcaattccaactagtttagaggatctatttgatgttagagtcaaaggatcttga |
31221054 |
T |
|
| Q |
218 |
aacacaaataatgttccaaaaggtgttgttgtttgtgtgactccagcatttccttttataccattcactataatataacctgttttgtttattgtctcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221053 |
aacacaaataatgttccaaaaggtgttgttgtttgtgtgactccagcatttccttttataccattcactataatataacctgttttgtttattgtctcat |
31220954 |
T |
|
| Q |
318 |
gttggtaaagtgaaaagtgaatggatttgaggttattgt |
356 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||| |
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| T |
31220953 |
gttggtaaagtgaaaagtggatggattttaggttattgt |
31220915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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