View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_15 (Length: 365)
Name: NF3622_low_15
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 199764 - 200117
Alignment:
| Q |
20 |
gtgggcctcttcccatgatcggaggtcctggtggtggaggattgtgcctatggttgtgaggataactcatgcttaattattttcttactagtgaattcaa |
119 |
Q |
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| T |
199764 |
gtggacctcttcccatgatcggaggtcctggtggtggaggattgtgcctatggttgtgaggataactcatgcttaattattttcttactagtgaattcaa |
199863 |
T |
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| Q |
120 |
aagtctatatagtaaataattta----gaaggttgaagagaagattgtgaa--------------------ggactgacttatggctgggaatgggaatt |
195 |
Q |
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| T |
199864 |
aagtctatatagtaaataatttatttagaaggttgaagagaagattgtgaatttgtccttgatgacacgagggactgacttatggctgggaatgggaatt |
199963 |
T |
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| Q |
196 |
gttgttgctgttgactagttgtttat----ataataatgttagtgctatctagaacgacattagagataattaatatgtcggcaatcccatcagtaactt |
291 |
Q |
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| T |
199964 |
gttgttgctgttgactagttgtttatgtaaataataatgttagtgctatctagaacgacattagaaataattaatatgtcggcaatcccatcagtaactt |
200063 |
T |
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| Q |
292 |
cgacttgagatatttgtggtttgagtagcgttagaatcactttctttctaatac |
345 |
Q |
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| T |
200064 |
ccacttgagatatttgtggtttgagtagcgttagaatcactttctttctaatac |
200117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 39932805 - 39932833
Alignment:
| Q |
337 |
ttctaatactccctccgtcccaaattgta |
365 |
Q |
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| T |
39932805 |
ttctaatactccctccgtcccaaattgta |
39932833 |
T |
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