View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_16 (Length: 364)
Name: NF3622_low_16
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 35 - 364
Target Start/End: Original strand, 35180858 - 35181192
Alignment:
| Q |
35 |
tccacatgtcttatgatatgtgagtggggtgtagactgcaggctactctactcttggtggtatgacatgggttggggaaaatgaggctaacaaaggaccc |
134 |
Q |
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| T |
35180858 |
tccacaagtcttatgatatctgagtggggtgtagactgcaggctactctactcttggtggtatgacaggggttggggaaaatgaggctaacaaaggaccc |
35180957 |
T |
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| Q |
135 |
accacctctctttaacggaccacattttataaaaattctatttgtgtatcattaaggcgaaaatatcaaat----atgaacaatttaattgtgatatata |
230 |
Q |
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| T |
35180958 |
accacctctctttaacaaaccacattctttaagaattctacttgtgtatcattaagacgaaaatatcacatgacattgaacaattcaattatgatacata |
35181057 |
T |
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| Q |
231 |
tgccgattcaactactttttctcacacatctttctatgtttcacttttagccta-ttttaatataacggtggatatgtcaaatactgtagcccaccttaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||| |
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| T |
35181058 |
ggccgattcaactactttttctcacacatctttctatgtttcacttttagcctatttttaatataaccgtggatatgtcaaatgctgtaacccaccttaa |
35181157 |
T |
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| Q |
330 |
ttgaacatggccgttgattcatatcggatggctac |
364 |
Q |
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| T |
35181158 |
ttgaacatggccgttgattcatatcggatggctac |
35181192 |
T |
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