View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_17 (Length: 359)
Name: NF3622_low_17
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 93 - 348
Target Start/End: Original strand, 19728143 - 19728399
Alignment:
| Q |
93 |
tgaagctcgtaagttactggctgccacaaaccaaaaatagatgctacagtgggatattaattaacatgagtacataacaacaacatagataaaatggtaa |
192 |
Q |
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| T |
19728143 |
tgaagctcgtaagttgctggctgccacaaaccaaaaatagatgctacagtgggatattaattaacatgagtacataacaacaacatggataaaatggtaa |
19728242 |
T |
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| Q |
193 |
ttataccaattagctagtctcctctctcttttctttgcagtgatggagagaaaccaaaaagttaaaatttgatctctcctatttctctctctttgacttc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19728243 |
ttataccaattagctagtctcctctctcttttctttgctgtgatggagagaaaccaaaaagttaaaatttggtctctcctatttctctctctttgacttc |
19728342 |
T |
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| Q |
293 |
tctccttaaccaaacagaagaaatgcacaatctctcttcta-ttatctctcccctat |
348 |
Q |
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| T |
19728343 |
tctccttaaccaaacagaagaaatgcacaatctctcctctatttctctctcccctat |
19728399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 20304075 - 20304152
Alignment:
| Q |
239 |
agagaaaccaaaaagttaaaatttgatctctcctatttctctctctttgacttctctccttaaccaaacagaagaaat |
316 |
Q |
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| T |
20304075 |
agagaaatcaaaaaggtgatattttatctctcatatttctctctctttaacttctctcctccaccaaaccgaagaaat |
20304152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 41132291 - 41132366
Alignment:
| Q |
240 |
gagaaaccaaaaagttaaaatttgatctctcctatttctctctctttgacttctctccttaaccaaacagaagaaa |
315 |
Q |
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| T |
41132291 |
gagaaagcaaaaagtggaaatttggtctctcttatttctctctctttaacctctcttcttcaccaaatacaagaaa |
41132366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 39040341 - 39040392
Alignment:
| Q |
264 |
atctctcctatttctctctctttgacttctctccttaaccaaacagaagaaa |
315 |
Q |
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| T |
39040341 |
atctctcctatttctctctccttgacttctctcctctatcaaacaaaagaaa |
39040392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 28441075 - 28441126
Alignment:
| Q |
257 |
aaatttgatctctcctatttctctctctttgacttctctccttaaccaaaca |
308 |
Q |
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| T |
28441075 |
aaatttggtctctcttatttctctctctttaacttctcttcttcaccaaaca |
28441126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 23477683 - 23477616
Alignment:
| Q |
248 |
aaaaagttaaaatttgatctctcctatttctctctctttgacttctctccttaaccaaacagaagaaa |
315 |
Q |
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||||||| ||||||| |||||| ||||||||||||||| || ||||| ||| |||||||| |||||| |
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| T |
23477683 |
aaaaagtggaaatttggtctctcttatttctctctctttaacctctcttcttcaccaaacacaagaaa |
23477616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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