View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_19 (Length: 336)
Name: NF3622_low_19
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 30607080 - 30607257
Alignment:
| Q |
16 |
cttagatcatctttgtcatcagttgccacatcctcatcagtttggttgttcttctccaatttcttaagctgactttcctataagaatttctttcgagctt |
115 |
Q |
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| T |
30607080 |
cttagatcatctttgtcatcagttgccacatcctcatcagtttggttgttcttctccaatttcttaagctgactttcctataagaatttctttcaa---- |
30607175 |
T |
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| Q |
116 |
catctatggcttcatctatatcttttattttaaaaaactgtggtaaccatctttgtcatcaattaccacggtttttaaaaataaaagata |
205 |
Q |
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| T |
30607176 |
--------gcttcatctatatctttaattttaaaaaactgtggtaaccatctttgtcatcaattaccacagtttttaaaaataaaagata |
30607257 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 30607337 - 30607429
Alignment:
| Q |
204 |
taggcaagatttctttgaagcttggttttattaaaaattatgatcaagccacatttttaattaagaatgata-ttttcctcaattaaaatcga |
295 |
Q |
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| T |
30607337 |
taggcaagatttctttgaagcttggttttattaaaaattatgatcaggccacatttttaattaagaatgatatttttcctcaatgaaaatcga |
30607429 |
T |
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