View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_low_24 (Length: 304)
Name: NF3622_low_24
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_24 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0182 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 29822 - 30091
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29822 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacatgaccatcatcatccaaatcaaatgcataaaagaatc |
29921 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29922 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttatctaaataatttctaac |
30021 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30022 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
30091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 26397537 - 26397806
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397537 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
26397636 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397637 |
ttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
26397736 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397737 |
atctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgctt |
26397806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 26460173 - 26459901
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatc---caaatcaaatgcataaaaga |
117 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
26460173 |
acatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaaga |
26460074 |
T |
|
| Q |
118 |
atcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttct |
217 |
Q |
| |
|
|||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||| | |
|
|
| T |
26460073 |
atcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagattttt |
26459974 |
T |
|
| Q |
218 |
aacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| | ||||||| |
|
|
| T |
26459973 |
aatatctttctccaagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaaatttgctt |
26459901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 25830094 - 25830350
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||| |||||| |||||| |||||||| | |||||||||||||||| ||||||||| |||| |
|
|
| T |
25830094 |
acatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaaaaaatc |
25830193 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
| | |||||||||||||||| |||||||| |||||| ||||| |||| ||||| || ||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
25830194 |
taggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatttctaat |
25830293 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggc |
277 |
Q |
| |
|
|||||||||||||| | || || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
25830294 |
gtctttctccaagcagctaatgttttcataccctccatgttgtttggccattgtggc |
25830350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 276932 - 277201
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276932 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
277031 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277032 |
ttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
277131 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277132 |
atctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgctt |
277201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 20646280 - 20646524
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
20646280 |
acatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatc |
20646379 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||| ||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
20646380 |
ttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaat |
20646479 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgttt |
265 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20646480 |
atctttctccgagcaaccaactttctcatatcctccgtgttgttt |
20646524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 56108508 - 56108239
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
|||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
56108508 |
acatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatc |
56108409 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
|| | ||||||||||||| |||||||| | || | |||||||||||||||||| ||||||||| |||||| || | |||||||||| ||||| || |
|
|
| T |
56108408 |
ctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttac |
56108309 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| | || |||||||||||||||||| ||||||||| |
|
|
| T |
56108308 |
atctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaattttgctt |
56108239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 26014275 - 26014006
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
|||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
26014275 |
acatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaatc |
26014176 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
|| | ||||||||||||| |||||||| | |||| |||||||||||||||||| ||||||||| |||||| || | |||||||||| ||||| || |
|
|
| T |
26014175 |
ctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttatctaaatggtttcttac |
26014076 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| | || |||||||||||||||||| | ||||||| |
|
|
| T |
26014075 |
atctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaaatttgctt |
26014006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 296
Target Start/End: Complemental strand, 33002494 - 33002220
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
120 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||| | |||||||||||||||| ||||||||| |||| |
|
|
| T |
33002494 |
acatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaaa-aatc |
33002396 |
T |
|
| Q |
121 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
220 |
Q |
| |
|
| | |||||||||||||||| |||||||| |||||| ||||| |||||||||| || ||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
33002395 |
taggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatttctaat |
33002296 |
T |
|
| Q |
221 |
atctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttcttttc |
296 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||||| |||||||||||||||||||| || |||||| || ||||| |
|
|
| T |
33002295 |
gtctttctccaagcatccaatgttttcataccctccatgttgtttggccattgtggcgaaaattttggttgttttc |
33002220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 6965780 - 6965511
Alignment:
| Q |
21 |
acatctccaaacactttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaat |
119 |
Q |
| |
|
|||||||||||| ||| ||| | |||||||| ||| ||| | ||||||||||||||||| | ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
6965780 |
acatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatcaattgcataaaagaat |
6965681 |
T |
|
| Q |
120 |
cttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaa |
219 |
Q |
| |
|
| || ||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |||||| || | |||||||||| ||||| | |
|
|
| T |
6965680 |
cctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgacctttatctaaatggtttctta |
6965581 |
T |
|
| Q |
220 |
catctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||| | || |||||||||||||||||| | ||||||| |
|
|
| T |
6965580 |
catctttctccaagcaaccaa-tgtttcatatcctccatattctttggccattgtggcaaaaaatttgctt |
6965511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 845527 - 845709
Alignment:
| Q |
108 |
gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatcta |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
845527 |
gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta |
845626 |
T |
|
| Q |
208 |
aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgctt |
290 |
Q |
| |
|
|| |||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
845627 |
aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgctt |
845709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 30400346 - 30400105
Alignment:
| Q |
27 |
ccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaat |
126 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| || |||| ||||| || |
|
|
| T |
30400346 |
ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat |
30400247 |
T |
|
| Q |
127 |
tttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatctaaataatttctaacatct |
224 |
Q |
| |
|
||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || ||| ||| |||| |||| |||||||||| |||||||| ||| |
|
|
| T |
30400246 |
tttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct |
30400148 |
T |
|
| Q |
225 |
ttctccaagcaaccaactttctcatatcctccgtgttgtttgg |
267 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
30400147 |
ttctccaagcaaccaatgttttcatatcatccatgttgtttgg |
30400105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 30406903 - 30406662
Alignment:
| Q |
27 |
ccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatcttgaat |
126 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| || |||| ||||| || |
|
|
| T |
30406903 |
ccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcacacaaaaaaatctaagat |
30406804 |
T |
|
| Q |
127 |
tttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattct--aaattcaaacgacggtccttatctaaataatttctaacatct |
224 |
Q |
| |
|
||| |||||||||| |||| ||| |||||| ||||||| |||| ||||| || ||| ||| |||| |||| |||||||||| |||||||| ||| |
|
|
| T |
30406803 |
tttattcttgcataagcat-aaacactccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatctaaatgatttctaatgtct |
30406705 |
T |
|
| Q |
225 |
ttctccaagcaaccaactttctcatatcctccgtgttgtttgg |
267 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
30406704 |
ttctccaagcaaccaatgttttcatatcatccatgttgtttgg |
30406662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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