View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_28 (Length: 272)
Name: NF3622_low_28
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 12143160 - 12143381
Alignment:
| Q |
33 |
tcaaaaggaaaaacagaattttatcagatcatc-cacgccagcaaatacagagattaaaatccctaaagatacatttttggtcttctttcatagaagtaa |
131 |
Q |
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| T |
12143160 |
tcaaaaggaaaaacagaattttatcagatcatcacacaccagcaaatacagagattaaaatccctaaagatacatttttggtcttctttcatagaagtaa |
12143259 |
T |
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| Q |
132 |
ttcttgatttgggaggagatatgtaaatatccttcattcacttcaaaagtccctagccgattgtttccatcctccagtctcctcctcttgattgtaactc |
231 |
Q |
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| T |
12143260 |
ttcttgatttgggaggagatatgtaaatatccttcattcacttcaaaagtccctagccgattgtttccatcctccggtctcctcctcttgattgtaactc |
12143359 |
T |
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| Q |
232 |
cgttcgtagttcctctgcaacc |
253 |
Q |
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||||||||||| |||||||||| |
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| T |
12143360 |
cgttcgtagtttctctgcaacc |
12143381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 12150274 - 12150342
Alignment:
| Q |
163 |
cttcattcacttcaaaagtccctagccgattgtttccatcctccagtctcctcctcttgattgtaactc |
231 |
Q |
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|||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||| |||||||||| |
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| T |
12150274 |
cttcattcacttcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactc |
12150342 |
T |
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