View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_32 (Length: 262)
Name: NF3622_low_32
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 53676894 - 53676648
Alignment:
| Q |
1 |
aatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtggaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676894 |
aatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtggaagt |
53676795 |
T |
|
| Q |
101 |
agaagcatgcttgtggactcaagttgaggatttaggaacaatgacgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaacttttcaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676794 |
agaagcctgcttgtggactcaagttgaggatttaggaacaatgacgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaacttttcaa |
53676695 |
T |
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| Q |
201 |
tgctgaaaattttactatctgttatgtgtgcagttgatgtagataat |
247 |
Q |
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| T |
53676694 |
tgctgaaaattttactatctgttatgtgtgcagttgatgtagataat |
53676648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 34131266 - 34131071
Alignment:
| Q |
1 |
aatgctgctaagaattgaaagttggttaagaacgaaa-gtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgtagaaaattgtggaag |
99 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
34131266 |
aatgctgctaagagttgaaagttggttaagaacgaaaagtaatttatgatgctaacgaattgtaatttgaaatgaataatgatttagaaaattgtagagg |
34131167 |
T |
|
| Q |
100 |
tagaagcatgcttgtggactcaagttgaggatttaggaacaa---tgacgtagaaattgtaattttatttagcttgtctgcatatttgtcatggaa |
192 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34131166 |
tagaagcatgcttgtggactccagttgaggatttaggaacaatattgacatagaaattgtaattttatttaacttgtctgcatatttgtcatggaa |
34131071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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