View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_low_34 (Length: 261)
Name: NF3622_low_34
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 10599370 - 10599623
Alignment:
| Q |
1 |
cagtagcctcagttacacatcaaactattcaaagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaacaacaatcatgtatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10599370 |
cagtagcctcagttacacatcaaactattcaaagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaccaacaatcatgtatgc |
10599469 |
T |
|
| Q |
101 |
accatgcttaactcttcgagcttcgaccagcctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599470 |
accatgcttaactcttcgagcttcgaccagcctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccac |
10599569 |
T |
|
| Q |
201 |
cgattgccgcaatcgtcaatgaccttgataatggtcgttttcttttccaacgtc |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599570 |
cgattgcagcaatcgtcaatgaccttgataatggtcgttttcttttccaacgtc |
10599623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 6254879 - 6254643
Alignment:
| Q |
15 |
acacatcaaactattcaaagacgttgaagacttaggtaaagagtgttgttgtttccagccgttggagcaacaacaatcatgtatgcaccatgcttaactc |
114 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6254879 |
acacatcaaacaattcaaagacatttaagacttaggtaaagagtgatgttgtttccagccgttggagcacgaacaatcatgtatgcaccatgcttaactc |
6254780 |
T |
|
| Q |
115 |
ttcgagcttcgaccagcctcttccactgacctccaaccttaaattgtttttcaggcagagattggtaaacagcaatatagtcccaccgattgccgcaatc |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
6254779 |
ttcgaccttcgaccagcctcttccactgacctccaaccttaaattgtttttcaggcagagattagtaaacatcaatacagtctcaccgattgccgcaatc |
6254680 |
T |
|
| Q |
215 |
gtcaatgaccttgataatggtcgttttcttttccaac |
251 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
6254679 |
gtcaatgaccatgataatggtcgtcttcctttccaac |
6254643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University