View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3622_low_35 (Length: 257)

Name: NF3622_low_35
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3622_low_35
NF3622_low_35
[»] chr7 (6 HSPs)
chr7 (1-150)||(48636021-48636169)
chr7 (162-209)||(9805434-9805481)
chr7 (162-217)||(35080286-35080341)
chr7 (162-217)||(35081601-35081656)
chr7 (162-208)||(23621990-23622036)
chr7 (167-209)||(36868771-36868813)
[»] chr4 (4 HSPs)
chr4 (162-217)||(8749046-8749101)
chr4 (162-217)||(8747694-8747749)
chr4 (162-217)||(33997896-33997951)
chr4 (162-217)||(8896953-8897008)
[»] chr5 (3 HSPs)
chr5 (162-239)||(124507-124584)
chr5 (162-217)||(5504136-5504191)
chr5 (162-217)||(5502921-5502975)
[»] chr2 (4 HSPs)
chr2 (162-217)||(27552455-27552510)
chr2 (166-217)||(12812843-12812894)
chr2 (162-209)||(27553815-27553862)
chr2 (162-207)||(10853155-10853200)
[»] chr3 (7 HSPs)
chr3 (162-239)||(51220580-51220657)
chr3 (162-217)||(10584082-10584137)
chr3 (162-217)||(32829743-32829798)
chr3 (162-208)||(21326323-21326369)
chr3 (162-215)||(26722536-26722589)
chr3 (162-209)||(53157184-53157230)
chr3 (162-207)||(32831100-32831145)
[»] chr6 (1 HSPs)
chr6 (159-217)||(22417658-22417716)
[»] chr8 (1 HSPs)
chr8 (162-207)||(13883878-13883923)
[»] chr1 (3 HSPs)
chr1 (162-217)||(46312068-46312123)
chr1 (166-209)||(46525850-46525893)
chr1 (162-207)||(3000223-3000268)
[»] scaffold1875 (1 HSPs)
scaffold1875 (162-215)||(759-812)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 48636169 - 48636021
Alignment:
Q  1 tccacctctttacatttaatttattgtcatatttttgttgataaaattatttttaacgttgaagtnnnnnnnnnnnnncatgtaaccaaagatgattacg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||    
T  48636169 tccacctctttacatttaacttattgtcatatttttgttgataaaattatttttaacgttgaagtaaaaaaaaaaaa-catgtaaccaaagatgattacg 48636071  T
Q  101 aaccatgaagctttttaggtgaatctaaattttcatgtatacgtgataat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48636070 aaccatgaagctttttaggtgaatctaaattttcatgtatacgtgataat 48636021  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 9805481 - 9805434
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 209  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9805481 taaactacagttttgaccccctaagtttgccaatgttgcgattttggc 9805434  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 35080286 - 35080341
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  35080286 taaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 35080341  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 35081656 - 35081601
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||    
T  35081656 taaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaat 35081601  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 23622036 - 23621990
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttgg 208  Q
    ||||||||| ||||| || | ||||||||||||||||||||||||||    
T  23622036 taaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 36868771 - 36868813
Alignment:
Q  167 tacacttttgaccccttaagtttgccaatgttgcgattttggc 209  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  36868771 tacacttttgaccccttaagttttccaaagttgtgattttggc 36868813  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 8749101 - 8749046
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8749101 taaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 8747694 - 8747749
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  8747694 taaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8747749  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 33997951 - 33997896
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||| | |||||||    
T  33997951 taaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 8897008 - 8896953
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| ||||||| || |||||||||||||||| |||||||||  |||||||    
T  8897008 taaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 124584 - 124507
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaatnnnnnnntgaatattttgcccc 239  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||       |||||||||||||||    
T  124584 taaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaataaaaaaatgaatattttgcccc 124507  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 5504191 - 5504136
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||| | |||||||    
T  5504191 taaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaat 5504136  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 5502921 - 5502975
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  5502921 taaactacagttttgaccc-ttaagtttgccaatgttgcaattttggccccctaat 5502975  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 27552455 - 27552510
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  27552455 taaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 12812843 - 12812894
Alignment:
Q  166 ctacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||| |||||||| ||||||||||| ||||||| ||||||||| |||||||    
T  12812843 ctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 27553862 - 27553815
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 209  Q
    ||||||||| |||| ||||| ||||||||| |||||||||||||||||    
T  27553862 taaactacagttttaaccccctaagtttgctaatgttgcgattttggc 27553815  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 207  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 51220657 - 51220580
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaatnnnnnnntgaatattttgcccc 239  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| || |||||||       |||||||||||||||    
T  51220657 taaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaataaaaaaatgaatattttgcccc 51220580  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 10584137 - 10584082
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||    
T  10584137 taaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 32829743 - 32829798
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||    
T  32829743 taaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaat 32829798  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 21326323 - 21326369
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttgg 208  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||||    
T  21326323 taaactacacttttgaccccttaagtttaccaatattgcaattttgg 21326369  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 26722536 - 26722589
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctcccta 215  Q
    ||||||||| ||||| |||| ||||||| ||||||||||||||||||| |||||    
T  26722536 taaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 53157230 - 53157184
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggc 209  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  53157230 taaactacagttttgacccct-aagtttgccaatgttgcgattctggc 53157184  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 32831145 - 32831100
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 207  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||    
T  32831145 taaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 22417658 - 22417716
Alignment:
Q  159 ggttaaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    |||||||||||| |||||||||| ||||||||| |||||| |||||||||| |||||||    
T  22417658 ggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13883923 - 13883878
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 207  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  13883923 taaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 46312068 - 46312123
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctccctaat 217  Q
    ||||||||| |||||||||| ||| ||| ||||||||||||||||||| |||||||    
T  46312068 taaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 46525893 - 46525850
Alignment:
Q  166 ctacacttttgaccccttaagtttgccaatgttgcgattttggc 209  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||    
T  46525893 ctacagttttggccccctaagtttgccaatgttgcgattttggc 46525850  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 3000268 - 3000223
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttg 207  Q
    ||||||||| |||||||||||||| ||||  |||||||||||||||    
T  3000268 taaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

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Target: scaffold1875 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 759 - 812
Alignment:
Q  162 taaactacacttttgaccccttaagtttgccaatgttgcgattttggctcccta 215  Q
    |||||| ||||||| |||||||||||||   ||||||||||||||||| |||||    
T  759 taaactgcacttttcaccccttaagtttcgaaatgttgcgattttggcccccta 812  T

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