View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_37 (Length: 250)
Name: NF3622_low_37
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_37 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 18079587 - 18079833
Alignment:
| Q |
7 |
tccaagaatatgctgaaagacttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttc |
106 |
Q |
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| T |
18079587 |
tccaagtatatgctgaaagacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttc |
18079686 |
T |
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| Q |
107 |
gtcaaaatgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatgtgtgttgctttgcccatgcttcatggctccannnnn |
203 |
Q |
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| T |
18079687 |
gtccaaatgtctcacttcttgctgtccatttcttcttgcttttttctctatcgttttattaatgtgtgttgctttgcccatgcttcatggctccattttt |
18079786 |
T |
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| Q |
204 |
nnncttcttatttcttttggattacttacataattgttattctgctt |
250 |
Q |
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| T |
18079787 |
tttcttcttatttcttttggattacttacataattgttattctgctt |
18079833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 51479945 - 51480189
Alignment:
| Q |
7 |
tccaagaatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttttt |
105 |
Q |
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| T |
51479945 |
tccaagtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggtacttttt |
51480044 |
T |
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| Q |
106 |
cgtcaaaatgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatgtgtgttgctttgcccatgcttcatggctccannnn |
202 |
Q |
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| T |
51480045 |
cgtccaaaagtctcatttcttgctgtccatttcttcttgcttttttctctatccttttattaatgtgtgttgctttgcccatgcttcatggctcc---tt |
51480141 |
T |
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| Q |
203 |
nnnncttcttatttcttttggattacttacataattgttattctgctt |
250 |
Q |
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| T |
51480142 |
ttttcttcttctttcttttggattacttacataattgatatcctgctt |
51480189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 30207376 - 30207205
Alignment:
| Q |
26 |
acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaaatgtctcacttct |
125 |
Q |
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| T |
30207376 |
acttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagacaaggta-tttttcctccaagagtctcacttct |
30207278 |
T |
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| Q |
126 |
tgctgtccat---ttcttgcttttttc--tctatggttttattaatgtgtgttgctttgcccatgcttcatgg |
193 |
Q |
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| T |
30207277 |
tgcaattcatttcttcttgcttttttctatctatccttttattaatgcgagttgcgtttctcatgcttcatgg |
30207205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 51496991 - 51497118
Alignment:
| Q |
14 |
atatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaa |
112 |
Q |
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|||||||||||| |||| ||||||||||||| | | ||||||||| ||||||| |||||||| |||| |||||||| |||| ||| ||||| || || |
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| T |
51496991 |
atatgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtatattttcctccaa |
51497090 |
T |
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| Q |
113 |
atgtctcacttcttgctgtccatttctt |
140 |
Q |
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| T |
51497091 |
aagtcttacttcttgcaatccatttctt |
51497118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 138041 - 137941
Alignment:
| Q |
7 |
tccaagaatatgctgaaagac-ttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttttt |
105 |
Q |
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|||||| ||||||||||| || ||||||||||||||||| || ||| ||||||||||| |||||||| |||| ||| |||| |||| ||| ||||| |
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| T |
138041 |
tccaagtatatgctgaaataccttcttccatatttaagagaattagatctagaacaaatggctgagaaggagatagaagccaagatacaaggtatttttt |
137942 |
T |
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| Q |
106 |
c |
106 |
Q |
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| T |
137941 |
c |
137941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 27395964 - 27396064
Alignment:
| Q |
7 |
tccaagaatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttttt |
105 |
Q |
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|||||| ||||||| |||| ||||||||| |||||| | ||| |||| |||||||||||| ||||||||| |||| ||| ||| |||| ||| ||||| |
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| T |
27395964 |
tccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaagttacaaggtatttttt |
27396063 |
T |
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| Q |
106 |
c |
106 |
Q |
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| T |
27396064 |
c |
27396064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 43160376 - 43160432
Alignment:
| Q |
10 |
aagaatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatg |
65 |
Q |
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|||||||| ||||||| |||||||||| |||||||| | | |||||||||||||||| |
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| T |
43160376 |
aagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatg |
43160432 |
T |
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