View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_38 (Length: 246)
Name: NF3622_low_38
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13416455 - 13416690
Alignment:
| Q |
1 |
tgttgcggagacttcaaaattctttatgttagggctgtaattacatttgtggaccacaatttaaaaccatgcacctgtctacctcaagtatgttgaggaa |
100 |
Q |
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| T |
13416455 |
tgttgcggagacttcaaaattctttatgttagggctgtaattacatttgtggaccacaatttaaaaccatgcacctgtctacctcaagtatgttgaggaa |
13416554 |
T |
|
| Q |
101 |
atgatggtagtggtgttgaatctatttctgttggaatgtgaacatctttgtattctttctattgaattgtatgagaaggacttgtaagattgtatgaata |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13416555 |
atgatggtagtggtgttgaatctattgctgttggaatgtgaacatctttgtattctttctattgaattgtatgagaaggacttgtaagattgtatgaata |
13416654 |
T |
|
| Q |
201 |
tacattcaaggaggatagatgacattggtagggtct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13416655 |
tacattcaaggaggatagatgacattggtagggtct |
13416690 |
T |
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