View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_42 (Length: 237)
Name: NF3622_low_42
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_42 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 51480465 - 51480632
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51480465 |
agtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttttaacatttgtcttctttgttgttgtgagcttcgttgtggga |
51480564 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatccaattgagtttgagtttgagtttatcttccgaggacgtgattatctgcatggt |
174 |
Q |
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| T |
51480565 |
agcttctaggtggtacagatccaa------ttgagtttgagtttatcttccgaggccgtgattatcttcatggt |
51480632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 51497321 - 51497488
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
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||||||| ||| ||||| |||||||||||||||||||| ||||||| | |||| |||||| |||||||||| ||||||| |||||||||||| |||||| |
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| T |
51497321 |
agtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcctttgttgctgtgagcttcgtggtggga |
51497420 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatccaattgagtttgagtttgagtttatcttccgaggacgtgattatctgcatggt |
174 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
51497421 |
agcttctaggtggtgcagatccaa------ttgagtttgagtttatcttccgagggcgtgattatcttcatggt |
51497488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 30206881 - 30206714
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
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||||||||||| ||||| |||||||| ||||||||||| ||||||| | ||||||||||| |||||||||| ||||||| || ||||||||| |||||| |
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| T |
30206881 |
agtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttttgacatttgtctcctttgttgctgcgagcttcgtggtggga |
30206782 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatccaattgagtttgagtttgagtttatcttccgaggacgtgattatctgcatggt |
174 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||| |||||| | |||||||||||||||| |
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| T |
30206781 |
agcttctaggtggtgcagatccaatcaagtttga------gtttatctaccgagggcttgattatctgcatggt |
30206714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 51455764 - 51455889
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||||| || |||| || ||||| ||| |||||| |
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| T |
51455764 |
agtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgttgctgcgagctccgtggtggga |
51455863 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatccaatt |
126 |
Q |
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| T |
51455864 |
agcttctaggtggtgcagatccaatt |
51455889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18085564 - 18085651
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagc |
88 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18085564 |
agtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttgttgtgagc |
18085651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43160697 - 43160819
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||| ||||| | | ||||| |||||||| ||||||| || |||| ||||||||| ||| |||||| |
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| T |
43160697 |
agtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaacctttgtctcctctgttgttgtgagctccgtggtggga |
43160796 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatcca |
123 |
Q |
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|||||||||||||| |||||||| |
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| T |
43160797 |
agcttctaggtggtccagatcca |
43160819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 27396474 - 27396609
Alignment:
| Q |
4 |
gacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtgggaagc |
103 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| ||||| | |||||| || ||| || ||||||| || |||| |||||||||||||||||| ||| |
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| T |
27396474 |
gacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgttgctgtgagcttcgttgtgggcagc |
27396573 |
T |
|
| Q |
104 |
ttctaggtggtgcagatccaattgagtttgagtttg |
139 |
Q |
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|||||||||| ||||| ||| |||| |||||||||| |
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| T |
27396574 |
ttctaggtggggcagaaccatttgattttgagtttg |
27396609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 137423 - 137289
Alignment:
| Q |
1 |
agtgacaactgtaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtcttctttgttattgtgagcttcgttgtggga |
100 |
Q |
| |
|
||||||||||| ||| | |||||| ||||||||||| ||||||| | ||||||||||| || ||||||||| ||||| ||| |||||| |||| |
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| T |
137423 |
agtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtcttcgttgttgcgctgaacttcgtcgtggtg |
137324 |
T |
|
| Q |
101 |
agcttctaggtggtgcagatccaattgagtttgag |
135 |
Q |
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|||||||||||||||| |||||| ||||||||||| |
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| T |
137323 |
agcttctaggtggtgctgatccagttgagtttgag |
137289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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