View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_low_45 (Length: 229)
Name: NF3622_low_45
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_45 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 5931689 - 5931917
Alignment:
| Q |
9 |
cttgaatctttgatggatccaataatgcaacccttattttcatccttcacccaatttttattatt----------atttgatgagtagtagtttacgtta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||| |||||||||||| ||| |
|
|
| T |
5931689 |
cttgaatctttgatggatccaataatgcaacccttattttcatccttcacccaattttttttttttttttttttcatttcatgggtagtagtttacctta |
5931788 |
T |
|
| Q |
99 |
caacattgtaataacaccgacacttctgattgaaagtttgtctggtgtgtgattacattgaattatgttannnnnnncttcaattgatcgatgtccatgt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | | |||||||||||||| |
|
|
| T |
5931789 |
caacattgtaataacaccgacacttctgattaaaagtttgtctggtgtgtgattacattgaattatgtt--ttttttttttagattatcgatgtccatgt |
5931886 |
T |
|
| Q |
199 |
ttaagtgtttttgttgtgtttgtgtatgtgc |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
5931887 |
ttaagtgtttttgttgtgtttgtgtacgtgc |
5931917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 36286568 - 36286531
Alignment:
| Q |
109 |
ataacaccgacacttctgattgaaagtttgtctggtgt |
146 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
36286568 |
ataacaccgacacttctgatcgaaagtgtgtctggtgt |
36286531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 34739010 - 34739046
Alignment:
| Q |
114 |
accgacacttctgattgaaagtttgtctggtgtgtga |
150 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34739010 |
accgacacttctgattgaaagtgtgtttggtgtgtga |
34739046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University