View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_48 (Length: 207)
Name: NF3622_low_48
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 4503903 - 4504014
Alignment:
| Q |
33 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtg-----nnnnnnncttgagaagagaagggttaataaccacaaatatt |
127 |
Q |
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| T |
4503903 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtgttttttttttttcttgagaacagaagggttaataaccacaaatatt |
4504002 |
T |
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| Q |
128 |
aaactcacctac |
139 |
Q |
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| T |
4504003 |
aaactcacctac |
4504014 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 4504033 - 4504069
Alignment:
| Q |
158 |
tgcaaatgttggagacaattcaactgctacctatgct |
194 |
Q |
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| T |
4504033 |
tgcaaatgttggagacaattcaactgctacctctgct |
4504069 |
T |
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