View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_5 (Length: 491)
Name: NF3622_low_5
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 34378685 - 34378866
Alignment:
| Q |
10 |
aagaatatctgaaataaatgcctccattaaataaataataaatggcccaaaaatatttgaagcttttctttctatgtcgattagtgccactgcaagtgtc |
109 |
Q |
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| T |
34378685 |
aagaatatctgaaataaatgcctccattaaataaataataaatggcccaaaaatatttgaagcttttctttctatgtcgattagtgccactgcaagtgtc |
34378784 |
T |
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| Q |
110 |
catcaccgtcacgactacagtcacagagcactacattagccgcttaagtcatttcgatccaatttccttcaaaggtttccaa |
191 |
Q |
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| T |
34378785 |
catcaccgtcacgactacagtcacagagcactacattagccgcttaagtcatttcgatccaatttccttcaaaggtttccaa |
34378866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 34379007 - 34379154
Alignment:
| Q |
328 |
caggaatcaaatttcatcataatcattcttggtttcttcttcttcactatattacaa-catttttcagtcacttcaacttcaaccaacaatggctatttt |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34379007 |
caggaatcaaatttcatcataatcattcttggtttcttcttcttcactatattacaaacatttttcagtcacttcaacttcaaccaacaatggctatttt |
34379106 |
T |
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| Q |
427 |
agatgttctcttaggaacgatcaatgtaacatttttctatgtcatttt |
474 |
Q |
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| T |
34379107 |
agatgttctcttaggaacgatcaatgtaacatttttctatgtcatttt |
34379154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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