View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_6 (Length: 474)
Name: NF3622_low_6
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 221 - 466
Target Start/End: Original strand, 22346272 - 22346524
Alignment:
| Q |
221 |
gcaaggttcatagttcatacctatcaaacagaagaagagaaacagtatgcaagtgcttcaagcacaaagcatttcaacacttgc-------tcatcattg |
313 |
Q |
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| T |
22346272 |
gcaaggttcatagttcatacctatcaaacagaagaagagaaacagtatgcaagtgcttcaagcacaaaacatttcaacactcaaagacacatcatcattg |
22346371 |
T |
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| Q |
314 |
ttcaatataaaaaatgtaaagagatgaattaatgtttatgaaagagtgagaatttattaataagagagatacaatgcaatctatgtcactatttaagtgc |
413 |
Q |
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| T |
22346372 |
ttcaatataaaaaatgtaaagagatgaattaatgtttatgaaagagtgagaatttattaataagagagatacaatgcaatctatgtcactatttaagtgc |
22346471 |
T |
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| Q |
414 |
aatctaagcattaacacactcagtttatctctgactctttctcactctgtgct |
466 |
Q |
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| T |
22346472 |
aatctaagcattaacacactcagtttatctctgactctttctcactctgtgct |
22346524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 22346129 - 22346216
Alignment:
| Q |
81 |
caagccatttttccaattaaaatccattactatcatttcaaattttgatctcaaaatagaaaaaattgttataaaatttcaacaatct |
168 |
Q |
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| T |
22346129 |
caagccatttttccaattaaaatccattactaccatttcaaattttgatctcaaaatagaaaaaaatgttataaaaattcaacaatct |
22346216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 22345976 - 22346050
Alignment:
| Q |
4 |
tataggcaagtgacaacataacaagacacagaaacatccttttatagagaaaaacattctacacactatcactag |
78 |
Q |
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| T |
22345976 |
tataggcaagtgacaacataacaagacacagaaacatccttttatagagaaaaacattctacacactaccactag |
22346050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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