View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_7 (Length: 459)
Name: NF3622_low_7
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 27771461 - 27771086
Alignment:
| Q |
6 |
catagtagagttgattcaaaggcgccttcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagttt |
105 |
Q |
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| T |
27771461 |
catagtagagttgagtcgaaggcgccatcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagttt |
27771362 |
T |
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| Q |
106 |
gtgaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttg |
205 |
Q |
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| T |
27771361 |
gtgaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttg |
27771262 |
T |
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| Q |
206 |
tgaagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagt |
305 |
Q |
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| T |
27771261 |
tgaagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagt |
27771162 |
T |
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| Q |
306 |
ccaattgcaatgaagagatcgttttctaatggaagattttcactaggtaaaattgatagaggaaaaaggcaaggaa |
381 |
Q |
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| T |
27771161 |
ccaattgcaatgaagagatcgttttctaatggaagattttcacttggtaaaattgatagaggaaaaaggcaaggaa |
27771086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
288 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
345 |
Q |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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