View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3622_low_8 (Length: 454)
Name: NF3622_low_8
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 222 - 438
Target Start/End: Complemental strand, 5931460 - 5931244
Alignment:
| Q |
222 |
gaagaaacctgttttgattggagccaaatagttgcaggacagaacaagcatgaatgagcgagtgcagcgaatacgttaccattttcgtatttgaaattgt |
321 |
Q |
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| T |
5931460 |
gaagaaacctgttttgattggagccaaatagttgcaggacagaacaagcatgaatgagcgagtgcagcgaatacgttaccattttcctatttgaaattgt |
5931361 |
T |
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| Q |
322 |
tgtaaggatttgtgcgctggtcttttttgggaataaattcatgtattgatatttgatctaatcattcacatgcatttcttttagtaaaattactcacttt |
421 |
Q |
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| T |
5931360 |
tgtaaggatttgtgcgctggtcttttttgggaataaattcatgtattgatatttgatctaatcattcacatgcattttttttagtaaaattactcacttt |
5931261 |
T |
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| Q |
422 |
attaaaacattattact |
438 |
Q |
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| T |
5931260 |
attaaaacattattact |
5931244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 5931677 - 5931522
Alignment:
| Q |
5 |
agtcataagattcacgtttcattattaaaattcatgtcactttcaaagatgagatggcaaagttgaataataataacaaaagtactattgtgtctcatat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5931677 |
agtcataagattcacgtttcattattaaaattcatgtcactttcaatgatgagatggcaaagttgaataataataacaaaagtactcttgtgtctcatat |
5931578 |
T |
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| Q |
105 |
tgtggcttaaaatgcaggcatattaaatgaaatgaacaaaggaaaatgaaatcaac |
160 |
Q |
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| T |
5931577 |
tgtggcttaaaatgcaggcatattaaatgaaatgaacaaaggaaaatgaaatcaac |
5931522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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