View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3622_low_9 (Length: 421)
Name: NF3622_low_9
Description: NF3622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3622_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 48637726 - 48637364
Alignment:
| Q |
18 |
catttctcacttaaattaaaacccataaaaaa-tgtatttgaaagaaacatctactctgttgcatgtatattagaaaatgatttaatttcattatttttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637726 |
catttctcacttaaattaaaacccataaaaaaatgtatttgaaagaaacatctactctgttgcatgtatattagaaaatgatttaatttcattatttttg |
48637627 |
T |
|
| Q |
117 |
tatgcttcttgataatctatggaagtgttctgattggataatctatgcatttgaaagaacatttgctcaagttcggataatatacttatgaaccttactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637626 |
tatgcttcttgataatctatggaagtgttctgattggataatctatgcatttgaaagaacatttgctcaagttcggataatatacttatgaaccttactt |
48637527 |
T |
|
| Q |
217 |
ttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaaataagattacgtagtgcaaatgtt |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637526 |
ttaacaacggtgaatttggacataccaacttaacattaagcgtccgcataagcatttttacctgagtttgatgaaaataagattacgtagtgcaaatgtt |
48637427 |
T |
|
| Q |
317 |
tcctgacttaaaggaccaatttgtaa-cnnnnnnntctaaatgaatgatttgttataaatatc |
378 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
48637426 |
tcctaacttaaaggaccaatttgtaaccaaaaaaatctaaatgaatgatttgttataaatatc |
48637364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 48636251 - 48636206
Alignment:
| Q |
376 |
atccacaccttgtacttcaaggtccttccccattagctaaatatgt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48636251 |
atccacaccttgtacttcaaggtccttccccattagctaaatatgt |
48636206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 33282848 - 33282997
Alignment:
| Q |
193 |
ataatatacttatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagca-tttttacctgagtttgatgaa |
291 |
Q |
| |
|
|||||| || |||||||| || |||||| || ||||||||| || ||||||||||||||||| ||||| |||| || |||||| ||||||||||| || |
|
|
| T |
33282848 |
ataatacacctatgaaccctaattttaagaatggtgaatttagacctaccaacttaacattaaacgtccacataaacactttttaactgagtttgattaa |
33282947 |
T |
|
| Q |
292 |
aataagattacgtagtgcaaatgtttcctgacttaaaggaccaatttgtaac |
343 |
Q |
| |
|
|||| ||| | | ||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
33282948 |
aatatgataatgatgtg--aatgttttatgacttaaaggaccaatttgtaac |
33282997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 47731158 - 47731218
Alignment:
| Q |
207 |
aaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataa |
267 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||||| |||||||||||| ||||| ||||| |
|
|
| T |
47731158 |
aaccttagttttaacagcggtgaatttgaaaataccgacttaacattaaacgtccatataa |
47731218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 10839987 - 10840060
Alignment:
| Q |
226 |
gtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaaataagat |
299 |
Q |
| |
|
||||||||||| ||| ||||||||||| || ||||| |||| || ||||| | |||||||||||||||||||| |
|
|
| T |
10839987 |
gtgaatttggacatatcaacttaacataaaacgtccacataaacacttttaaccgagtttgatgaaaataagat |
10840060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 4606213 - 4606151
Alignment:
| Q |
193 |
ataatatacttatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaa |
255 |
Q |
| |
|
|||||| ||||||||||| || |||||| | | |||||||||| |||||||||||||||||| |
|
|
| T |
4606213 |
ataatacacttatgaaccctagttttaagatggatgaatttggacataccaacttaacattaa |
4606151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 35293044 - 35293144
Alignment:
| Q |
193 |
ataatatacttatgaaccttacttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcatttttacctgagtttgatgaaa |
292 |
Q |
| |
|
|||||| | ||||||||| || |||| | | || ||||||| || |||||||||||||||||| ||| | |||| |||||||| |||||||| |||||| |
|
|
| T |
35293044 |
ataatacatttatgaaccctaattttgagagcgatgaatttagacataccaacttaacattaaacgttcatata--catttttaactgagtttaatgaaa |
35293141 |
T |
|
| Q |
293 |
ata |
295 |
Q |
| |
|
||| |
|
|
| T |
35293142 |
ata |
35293144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 7817001 - 7816916
Alignment:
| Q |
215 |
ttttaacaacggtgaatttggatataccaacttaacattaagcgtccgtataagcattttt-acctgagtttgatgaaaataagat |
299 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||||||||| | | |||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
7817001 |
ttttaacaacaatgaatttagacatactaacttaacattaagtgctcacataaacatttttcaactgagtttgatgaaaataagat |
7816916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University