View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3623_low_1 (Length: 901)
Name: NF3623_low_1
Description: NF3623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3623_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 409 - 885
Target Start/End: Complemental strand, 47422555 - 47422079
Alignment:
| Q |
409 |
ggtgcaattgtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttg |
508 |
Q |
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| T |
47422555 |
ggtgcaattgtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttg |
47422456 |
T |
|
| Q |
509 |
ttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagc |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422455 |
ttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagc |
47422356 |
T |
|
| Q |
609 |
ttattgtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttt |
708 |
Q |
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| T |
47422355 |
ttattgtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttt |
47422256 |
T |
|
| Q |
709 |
tgttctttgatttctccatcctcaccttgtcgttatcatcatcacattgcttggtctctactctatcatcttcttcgtgttgggtgttttcgtcaacact |
808 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
47422255 |
tgttctttgatttctccatcctcaccttgtcgtcatcatcatcacattgcttggtctctaatctatcatcttcttcgagttgggtgttttcgtcaacact |
47422156 |
T |
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| Q |
809 |
aacaccaccaccttgataaagatcttgaagctcgctaacgaaccggggggaaaatgatgcattctcatgttcaaact |
885 |
Q |
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| T |
47422155 |
aaaaccaccaccttgataaagatcttgaagctcgctaacgaaccgggggaaaaatgatgcgttctcatgttcaaact |
47422079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 47422938 - 47423371
Alignment:
| Q |
1 |
gaataagaagaaaaggtcaatggattctaggacttgtccttattttcatcaactcagttgtttgtataataagcagcagcagcaggaaaaataattgatc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
47422938 |
gaataagaagaaaaggtcaatggattctaggacttgtccttattttcatcaactcagttctttgtataat------cagcagcaggaaaaataattgatc |
47423031 |
T |
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| Q |
101 |
caccccaagctcagtcttctgattctccaatggggtagtataaacat-----------------catgtttatcatgcaatcagtgaattagccggtgag |
183 |
Q |
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| T |
47423032 |
caccccaagctcagtcttctgattctccaatggggtagtataaacatgattaagaatgatacatcatgtttatcatgcaatcagtgaattagccggtgag |
47423131 |
T |
|
| Q |
184 |
aaaatatatttttgaatttgtttacttgtcccannnnnnnnnc---------catcaaaataattagttcaaccatatannnnnnncgtttcttttaatt |
274 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47423132 |
aaaatatatttttgaatttgtttacttgtcccatttttgtttttttttttttcatcaaaataattagttcaaccatatatttttttcgtttcttttaatt |
47423231 |
T |
|
| Q |
275 |
gttttgcttggtgattagcatccttgttttgttagaagaaaatcacggttcaaattataacttgttagcatactgcagtccaccccagtgactgcggaga |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47423232 |
gttttgcttggtgattagcatccttgttttgttagaagaaaatcacggttcaaattataacttgttagcatactgcagtccaccccagtgactgcggaga |
47423331 |
T |
|
| Q |
375 |
aatacatctatttatatatgttgggagcttccacggtgca |
414 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
47423332 |
aatacatctatttatatatgttgggagcttctacggtgca |
47423371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 537 - 689
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
537 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
636 |
Q |
| |
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||||||||||| ||||| | ||| |||||| || ||| |||| ||||||||| | ||| ||||||| ||||| ||||| |||||||||||||| | | |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
|
| Q |
637 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
689 |
Q |
| |
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| ||||| || || || |||||||||||| ||| |||| ||||||||||||| |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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