View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3624_high_18 (Length: 204)
Name: NF3624_high_18
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 27747201 - 27747073
Alignment:
| Q |
69 |
atatcagtgtattttaaaagatcattagcaaaaggggccttagttatttctaacataggaaaatcacattcaaattgaccccaaaaccaggaatctgtgt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27747201 |
atatcagtgtattttaaaagatcattagcaaaaggggccttagttatttctaacataggaaaatcacattcagattgaccccaaaaccaggaatctgtgt |
27747102 |
T |
|
| Q |
169 |
cca----tgtaactttgttttcatctctc |
193 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
27747101 |
ccatgtatgtaactttgttttcatctctc |
27747073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University