View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3624_high_8 (Length: 338)
Name: NF3624_high_8
Description: NF3624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3624_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 10193541 - 10193863
Alignment:
| Q |
10 |
caaatgaggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtccttggcaaggaagag |
109 |
Q |
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| T |
10193541 |
caaatgaggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtccttggcaaggaagag |
10193640 |
T |
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| Q |
110 |
aacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactctccacaagtgcagcagagc |
209 |
Q |
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| T |
10193641 |
aacaaagtccactaccatcagtttcaacagaggagcggaaatacaatctaagcgagcaagattctgaatctcatattactctccacaagtgcagcagagc |
10193740 |
T |
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| Q |
210 |
ttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaaaacaattctcccttttgaggacaagacgaaatgtttcaggggaaat |
309 |
Q |
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| T |
10193741 |
ttttaacccactgggagcagcttccctcatgtaaaggagaaagctttcgtaaaaaacaattctcccttttgagaacaagacgaaatgtttcaggggaaat |
10193840 |
T |
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| Q |
310 |
tgacagtagtaggcctttgattc |
332 |
Q |
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| T |
10193841 |
tgacagtagtaggcctttgattc |
10193863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 19459535 - 19459368
Alignment:
| Q |
164 |
agcaagattctgaatctcatattactctccacaagtgcagcagagcttttaacccactgggagcagcttccctcatgtaaaggggaaagctttcgtaaaa |
263 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||| | | ||| |
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| T |
19459535 |
agcaagattctgaatctcatattacgccccacaagtgcagcagagctttcaacgcactgggaacagcttccctcatgtaaaggtgaaagcttccatcaaa |
19459436 |
T |
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| Q |
264 |
aacaattctcccttttgaggacaagacgaaatgtttcaggggaaattgacagtagtaggcctttgattc |
332 |
Q |
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| T |
19459435 |
agcaattttcccttttgaggacaa-acgaaagatttcaggggaaattgacagtagtaagcctttgattc |
19459368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 19459656 - 19459575
Alignment:
| Q |
16 |
aggcagctagggcaaacaccaattaaggcggaatttccaacagggtgtatgtcaaaattcaatcataaagactaaggtcctt |
97 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
19459656 |
aggcagctagggcagacaccaattaaggcggaatttccaacaaggtgtatgtcaaaattcaatcataaaggctgaggtcctt |
19459575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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